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[172009_x_at]

Description AV176138_rc /REP_DB=TREMBL Accession /GB=AV176138 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 50      6grp_total > 07      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3108
1 2 3 4 range
A 552.2
(-2.7)
P 		399.7
(-3)
P 		389.6
(-3)
P 		3402.2
(3)
P 		3013
B 556.6
(-2.7)
P 		414.1
(-3)
P 		406.8
(-3)
P 		3063.2
(3)
P 		2656
C 515
(-2.5)
P 		394.4
(-2.8)
P 		293.8
(-3)
P 		2722
(3)
P 		2428
avr 541.3
(-2.6) 		402.7
(-2.9) 		363.4
(-3) 		3062.5
(3) 		2699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 599.9
(3)
P 		504.3
(-0)
P 		490.3
(-0.5)
P 		410.1
(-3)
P 		425.5
(-2.5)
P 		511.1
(0.2)
P 		190
B 597.8
(3)
P 		483.9
(-0.4)
P 		447.5
(-1.5)
P 		464.6
(-1)
P 		396.3
(-3)
P 		436
(-1.8)
P 		202
C 540.6
(3)
P 		490.7
(1.3)
P 		389
(-2.3)
P 		541.3
(3)
P 		367.8
(-3)
P 		463
(0.3)
P 		174
avr 579.4
(3) 		493
(0.2) 		442.3
(-1.5) 		472
(-0.5) 		396.5
(-3) 		470
(-0.6) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 566
1 2 3 4 range
A 201.1
(-1.3)
P 		86.8
(-3)
P 		101.8
(-2.8)
P 		498
(3)
P 		411
B 177.5
(-2.1)
P 		102.3
(-2.9)
P 		94.3
(-3)
P 		652.8
(3)
P 		559
C 170.5
(-1.9)
P 		113.4
(-2.8)
P 		102.4
(-3)
P 		459
(3)
P 		357
avr 183
(-1.9) 		100.8
(-3) 		99.5
(-3) 		536.6
(3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 110.6
(-2.5)
P 		179.4
(3)
P 		106.8
(-2.8)
P 		104
(-3)
P 		128.4
(-1.1)
P 		124.4
(-1.4)
P 		75
B 208
(3)
P 		161.1
(0.2)
P 		108.7
(-3)
P 		123.1
(-2.1)
P 		161
(0.2)
P 		162.6
(0.3)
P 		99
C 200.4
(3)
P 		149.7
(-0)
P 		99
(-3)
P 		108.9
(-2.4)
P 		119
(-1.8)
P 		155
(0.3)
P 		101
avr 173
(3) 		163.4
(2.2) 		104.8
(-3) 		112
(-2.4) 		136.1
(-0.2) 		147.3
(0.7) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172009_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27977
Sequence Type Exemplar sequence
Representative Public ID AV176138 NCBI
Target Description AV176138_rc /REP_DB=TREMBL Accession /GB=AV176138 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk508e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067151
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067151 NCBI Caenorhabditis elegans Y56A3A.18 (Y56A3A.18) mRNA, complete cds. A 
Y56A3A.18.2 ENSEMBL cdna:known chromosome:CEL140:III:11917711:11918595:-1 gene:Y56A3A.18 None
Y56A3A.18.1 ENSEMBL cdna:known chromosome:CEL140:III:11917719:11918597:-1 gene:Y56A3A.18 None
SNAP00000035198 ENSEMBL cdna:SNAP chromosome:CEL140:III:11917822:11918589:-1 None
GENEFINDER00000035210 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11917822:11918589:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004015 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11917796-11918065(-) 76.42 76.42
Public Domain and Genome References
Gene Title
Ensembl Y56A3A.18
Entrez Gene 176624 Entrez gene
SwissProt Q9U239 EMBL-EBI
WormBase CE22586 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16216.1.S1_AT similar to Zinc finger protein 593 (Zinc finger protein T86) cfa
CANINE_2:CFAAFFX.19596.1.S1_S_AT similar to Zinc finger protein 593 (Zinc finger protein T86) cfa
DROSOPHILA_2:1631813_AT dm
DROSGENOME1:144605_AT dm
CHICKEN:GGA.4525.1.S1_S_AT zinc finger protein 593 gga
CHICKEN:GGA.4525.2.S1_AT zinc finger protein 593 gga
CHICKEN:GGAAFFX.336.1.S1_AT zinc finger protein 593 gga
HG-U133A:204175_AT zinc finger protein 593 hs
HG-U133_PLUS_2:204175_AT zinc finger protein 593 hs
HG-FOCUS:204175_AT zinc finger protein 593 hs
HG-U133A_2:204175_AT zinc finger protein 593 hs
HU35KSUBA:RC_AA258482_S_AT zinc finger protein 593 hs
HU35KSUBA:D45213_AT zinc finger protein 593 hs
U133_X3P:G7705661_3P_AT zinc finger protein 593 hs
HG-U95AV2:38640_AT zinc finger protein 593 hs
MOUSE430_2:1449946_A_AT RIKEN cDNA 3110024A21 gene mm
MOE430A:1449946_A_AT RIKEN cDNA 3110024A21 gene mm
MOUSE430A_2:1449946_A_AT RIKEN cDNA 3110024A21 gene mm
MG-U74BV2:114001_AT RIKEN cDNA 3110024A21 gene mm
MG-U74BV2:164588_AT RIKEN cDNA 3110024A21 gene mm
MOE430B:1447703_X_AT RIKEN cDNA 3110024A21 gene mm
MOUSE430_2:1447703_X_AT RIKEN cDNA 3110024A21 gene mm
MOE430B:1435318_AT RIKEN cDNA 3110024A21 gene, mRNA (cDNA clone MGC:6505 IMAGE:2648747) mm
MOUSE430_2:1435318_AT RIKEN cDNA 3110024A21 gene, mRNA (cDNA clone MGC:6505 IMAGE:2648747) mm
MG-U74CV2:166204_AT RIKEN cDNA 3110024A21 gene, mRNA (cDNA clone MGC:6505 IMAGE:2648747) mm
MU19KSUBB:TC34047_AT RIKEN cDNA 3110024A21 gene, mRNA (cDNA clone MGC:6505 IMAGE:2648747) mm
RAE230A:1380030_AT zinc finger protein 593 (predicted) rn
RAT230_2:1380030_AT zinc finger protein 593 (predicted) rn
RAE230A:1377415_AT Zinc finger protein 593 (predicted) rn
RAT230_2:1377415_AT Zinc finger protein 593 (predicted) rn
RAE230B:1395668_AT Zinc finger protein 593 (predicted) rn
RAT230_2:1395668_AT Zinc finger protein 593 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60500 Hypothetical protein Y56A3A.18 [Caenorhabditis elegans] ref|NP_499552.1| Y56A3A.18 [Caenorhabditis elegans] 2.0E-70
blast CAE67744 Hypothetical protein CBG13319 [Caenorhabditis briggsae] emb|CAE67739.1| Hypothetical protein CBG13314 [Caenorhabditis briggsae] 1.0E-64
Sequence
Target Sequence 
>C. ELEGANS:172009_X_AT
agcggcatttcgtcgtcgaggaaacccgacagcttcttcgcaggacggaattgcaccaga
cccgtgtgaagacgctgaaagaggttccatacacacaggcagaagccaacgccgccnggt
ggctcaggttcttccccggcgatcactttgaaaacacgagtcgaacttcccaagcagccg
gagattccgatttcctgtggtggcaga

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCGGCATTTCGTCGTCGAGGAAAC 62 57 83 Antisense
GTCGAGGAAACCCGACAGCTTCTTC 269 471 97 Antisense
ACAGCTTCTTCGCAGGACGGAATTG 169 107 111 Antisense
GCAGGACGGAATTGCACCAGACCCG 260 311 122 Antisense
CACCAGACCCGTGTGAAGACGCTGA 590 199 136 Antisense
GAAAGAGGTTCCATACACACAGGCA 409 359 159 Antisense
ACACACAGGCAGAAGCCAACGCCGC 330 109 173 Antisense
TCCCCGGCGATCACTTTGAAAACAC 354 353 215 Antisense
GAAAACACGAGTCGAACTTCCCAAG 404 355 232 Antisense
AACTTCCCAAGCAGCCGGAGATTCC 317 139 246 Antisense
GATTCCGATTTCCTGTGGTGGCAGA 445 433 265 Antisense
Sequence Source Affymetrix Proprietary Database