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[172008_x_at]

Description AV200674 /REP_DB=TREMBL Accession /GB=AV200674 /FEA=Transcript Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk578h2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 80      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 06      6grp_total > 92      4grp_total > 16      6grp_high1_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8285
1 2 3 4 range
A 8581.3
(0.1)
P 		4346.7
(-3)
P 		11163.2
(1.9)
P 		12631.5
(3)
P 		8285
B 6859.2
(-3)
P 		9324.1
(3)
P 		7939.9
(-0.4)
P 		8815.6
(1.8)
P 		2465
C 5722.8
(-3)
P 		8627
(-0)
P 		8400.8
(-0.3)
P 		11587.8
(3)
P 		5865
avr 7054.4
(-3) 		7432.6
(-2.4) 		9168
(0.2) 		11011.6
(3) 		3957

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10938
1 2 3 4 5 6 range
A 5988.2
(-2.6)
P 		7519.4
(-1)
P 		11600
(3)
P 		6117.4
(-2.4)
P 		10532.5
(1.9)
P 		5549.4
(-3)
P 		6051
B 14496.5
(3)
P 		9634
(-1.2)
P 		7570.7
(-3)
P 		11034.8
(0)
P 		11867.2
(0.7)
P 		8356.1
(-2.3)
P 		6926
C 3558.6
(-3)
P 		9963.8
(3)
P 		8496.6
(1.6)
P 		7884.8
(1.1)
P 		7749.1
(0.9)
P 		6983.6
(0.2)
P 		6405
avr 8014.4
(-1) 		9039.1
(1) 		9222.4
(1.4) 		8345.7
(-0.3) 		10049.6
(3) 		6963
(-3) 		3087
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2181
1 2 3 4 range
A 3124.4
(3)
P 		943.6
(-3)
P 		2918.3
(2.4)
P 		1849
(-0.5)
P 		2181
B 2187.4
(1.5)
P 		2302.8
(3)
P 		1839.9
(-3)
P 		1878.6
(-2.5)
P 		463
C 1894.4
(-3)
P 		2480.3
(0.4)
P 		2927.9
(3)
P 		1953.9
(-2.7)
P 		1034
avr 2402.1
(1.6) 		1908.9
(-2.9) 		2562
(3) 		1893.8
(-3) 		668

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3940
1 2 3 4 5 6 range
A 1103.9
(-3)
P 		2674.3
(1.5)
P 		2526.2
(1.1)
P 		1551.5
(-1.7)
P 		3178.3
(3)
P 		1351.1
(-2.3)
P 		2074
B 5044.1
(3)
P 		3206.7
(-0.4)
P 		1838.4
(-3)
P 		2922.7
(-1)
P 		4821.5
(2.6)
P 		3116
(-0.6)
P 		3206
C 1319
(-3)
P 		3040.3
(3)
P 		2162.5
(-0.1)
P 		1585.6
(-2.1)
P 		2507.5
(1.1)
P 		2337.8
(0.6)
P 		1721
avr 2489
(-1.1) 		2973.8
(0.9) 		2175.7
(-2.4) 		2019.9
(-3) 		3502.4
(3) 		2268.3
(-2) 		1483
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172008_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27596
Sequence Type Exemplar sequence
Representative Public ID AV200674 NCBI
Target Description AV200674 /REP_DB=TREMBL Accession /GB=AV200674 /FEA=Transcript Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk578h2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200674
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200674 AV200674 /REP_DB=TREMBL Accession /GB=AV200674 /FEA=Transcript Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk578h2 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172008_X_AT
tagacgattagttaatgctgtatttattgcacccctacatctatnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnacccaataaatctcatcttagtaacattgtnnnnnt
actgtttctaaaatttagcctaaacattctacctacgaaaattaacaat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGACGATTAGTTAATGCTGTATTT 223 651 142 Antisense
GTTAATGCTGTATTTATTGCACCCC 692 445 152 Antisense
TAATGCTGTATTTATTGCACCCCTA 36 637 154 Antisense
TGTATTTATTGCACCCCTACATCTA 396 561 160 Antisense
ACCCAATAAATCTCATCTTAGTAAC 289 39 226 Antisense
ATAAATCTCATCTTAGTAACATTGT 105 25 231 Antisense
ATTTAGCCTAAACATTCTACCTACG 149 11 274 Antisense
TTAGCCTAAACATTCTACCTACGAA 322 681 276 Antisense
TAGCCTAAACATTCTACCTACGAAA 487 645 277 Antisense
GCCTAAACATTCTACCTACGAAAAT 710 275 279 Antisense
CATTCTACCTACGAAAATTAACAAT 599 211 286 Antisense
Sequence Source Affymetrix Proprietary Database