[Home] | [Total List]

[172006_x_at]

Description g459702 /REP_DB=GenBank Identifier /CHR=1 /FEA=Mapped Transcript
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 41      6grp_total > 03      4grp_total > 58      6grp_cgc > 40      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 570.9
(-0.8)
P 		749.3
(3)
P 		650.3
(0.9)
P 		468.6
(-3)
P 		281
B 545.4
(-2.4)
P 		543.6
(-2.5)
P 		666.9
(3)
P 		531.7
(-3)
P 		135
C 509.4
(-1.8)
P 		681.8
(1.9)
P 		730.5
(3)
P 		452.9
(-3)
P 		278
avr 541.9
(-1.3) 		658.2
(2.3) 		682.6
(3) 		484.4
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 910.4
(3)
P 		816.1
(0.4)
P 		820.8
(0.6)
P 		793.1
(-0.2)
P 		715.7
(-2.3)
P 		689.8
(-3)
P 		221
B 919.1
(2.7)
P 		858.8
(1.5)
P 		736.3
(-0.8)
P 		935.9
(3)
P 		617.1
(-3)
P 		686.4
(-1.7)
P 		319
C 872.6
(1.5)
P 		771.5
(-0.3)
P 		668.8
(-2.1)
P 		957.5
(3)
P 		652.9
(-2.4)
P 		616.1
(-3)
P 		341
avr 900.7
(3) 		815.5
(0.9) 		742
(-1) 		895.5
(2.9) 		661.9
(-3) 		664.1
(-2.9) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 207.9
(3)
P 		162.7
(1.1)
P 		170
(1.4)
P 		68.6
(-3)
P 		139
B 173.9
(3)
P 		134.3
(-0.9)
P 		154.5
(1.1)
P 		113.3
(-3)
P 		61
C 168.6
(0.1)
P 		196
(1)
P 		254.6
(3)
P 		76.4
(-3)
P 		178
avr 183.5
(2.5) 		164.3
(1.4) 		193
(3) 		86.1
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 167.8
(-3)
P 		290.2
(3)
P 		178.8
(-2.5)
P 		201.1
(-1.4)
P 		216
(-0.6)
P 		168
(-3)
P 		122
B 319.8
(3)
P 		285.8
(1.6)
P 		178.8
(-3)
P 		247.9
(-0.1)
P 		250.7
(0.1)
P 		256
(0.3)
P 		141
C 323.4
(3)
P 		235.4
(-0.4)
P 		170.2
(-3)
P 		192.5
(-2.1)
P 		211.3
(-1.4)
P 		206.2
(-1.6)
P 		153
avr 270.3
(3) 		270.5
(3) 		175.9
(-3) 		213.8
(-0.6) 		226
(0.2) 		210.1
(-0.8) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172006_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19669
Sequence Type Exemplar sequence
Representative Public ID 459702 NCBI
Target Description g459702 /REP_DB=GenBank Identifier /CHR=1 /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026372 NCBI Caenorhabditis elegans K04F10.4d (endoprotease) mRNA, complete cds. 11/11 None
GENEFINDER00000027825 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6360824:6364593:1 9/11 None
SNAP00000027820 ENSEMBL cdna:SNAP chromosome:CEL140:I:6362867:6364593:1 9/11 None
K04F10.4d ENSEMBL cdna:known chromosome:CEL140:I:6350572:6364813:1 gene:K04F10.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172333 6 1 NM_001026369 175669_at (11)
NM_001026370 175666_s_at (11)
NM_001026371 191107_s_at (11)
NM_001026372 172006_x_at (11), 191062_s_at (11), 191107_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6352039-6364742(+) 100.0 100.0
Public Domain and Genome References
Ensembl K04F10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96754 Blistered cuticle protein 4, isoform d [Caenorhabditis elegans] ref|NP_001021543.1| K04F10.4d [Caenorhabditis elegans] pir||D87803 protein bli-4D [imported] - Caenorhabditis elegans 0.0
blast P51559 Endoprotease bli-4 precursor (Blisterase) (Blistered cuticle protein 4) 0.0
blast AAB96757 Blistered cuticle protein 4, isoform c [Caenorhabditis elegans] ref|NP_001021542.1| K04F10.4c [Caenorhabditis elegans] 0.0
blast AAB96754 Blistered cuticle protein 4, isoform d [Caenorhabditis elegans] ref|NP_001021543.1| K04F10.4d [Caenorhabditis elegans] pir||D87803 protein bli-4D [imported] - Caenorhabditis elegans 1.0E-145
blast T37314 probable kexin (EC 3.4.21.61) - Caenorhabditis elegans (fragment) gb|AAA98752.1| endoprotease 1.0E-144
blast P51559 Endoprotease bli-4 precursor (Blisterase) (Blistered cuticle protein 4) 1.0E-144
blast AAB96754 Blistered cuticle protein 4, isoform d [Caenorhabditis elegans] ref|NP_001021543.1| K04F10.4d [Caenorhabditis elegans] pir||D87803 protein bli-4D [imported] - Caenorhabditis elegans 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR002884 EMBL-EBI Peptidase S8B, proprotein convertase, P domain 2.9E-70
Pfam IPR000209 EMBL-EBI Peptidase S8 and S53, subtilisin, kexin, sedolisin 2.2E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021543.1 1 873-892
K04F10.4d 1 873-892
GENEFINDER00000027825 1 388-407
SNAP00000027820 1 206-225
Sequence
Target Sequence 
>C. ELEGANS:172006_X_AT
tgcgactcctcatgcgaaacttgcaccgctcctggtccaatgagctgtgagaaatgttca
aaaggttatggtaaaggatcgattggatactgtagaccgtgttgtcctgaaggatcaaca
aagagttggcaatgtgaggactgctccaagccggatcctacacttttgattgattctaat
aaatcatctggatttggattgatgttctggattgtagttagtttgattgcggcttgtgga
atctgtgcctgtaaaaagtgtgcaagtgagacgaaaagctcaaacgtagaatatgcgccg
cttgctcaatataatgccacaaatggtgctatcaatttaggagcacacactgacgatgaa
gacgatgatgaggatgaagtatttgtgaaccctcaaattgtttaaaccaaacctttcaaa
attcatgtttttaattgtaatttttctgccaacttctttgtgtatgcttgtgaaatccgg
gtaattgtttctttttcaaaattttaaaacctgaaacgttttcaagtggccttttatcat
gtgattgtattgtttcttttgtcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGACTCCTCATGCGAAACTTGCA 404 581 1318 Antisense
ACCGCTCCTGGTCCAATGAGCTGTG 553 89 1342 Antisense
GATACTGTAGACCGTGTTGTCCTGA 630 423 1403 Antisense
GGCAATGTGAGGACTGCTCCAAGCC 310 533 1445 Antisense
AGCCGGATCCTACACTTTTGATTGA 584 83 1466 Antisense
GCGGCTTGTGGAATCTGTGCCTGTA 137 293 1546 Antisense
AAACGTAGAATATGCGCCGCTTGCT 336 127 1599 Antisense
GCGCCGCTTGCTCAATATAATGCCA 27 289 1612 Antisense
GGAGCACACACTGACGATGAAGACG 377 519 1657 Antisense
TTCTGCCAACTTCTTTGTGTATGCT 175 693 1761 Antisense
GATTGTATTGTTTCTTTTGTCTTAT 461 435 1860 Antisense
Sequence Source GenBank