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[172005_x_at]

Description g987520 /REP_DB=GenBank Identifier /GB=U33051.1 /PROTEIN_GB=AAA85507.1 /CHR=1 /FEA=Mapped Transcript
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 70      6grp_total > 37      4grp_total > 22      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 351.8
(2)
P 		269.4
(-1.5)
P 		234.6
(-3)
P 		375.8
(3)
P 		141
B 455.7
(3)
P 		270
(-3)
P 		272.4
(-2.9)
P 		378.8
(0.5)
P 		186
C 446.3
(2.6)
P 		277.5
(-1.7)
P 		226.7
(-3)
P 		461.7
(3)
P 		235
avr 417.9
(3) 		272.3
(-2) 		244.6
(-3) 		405.4
(2.6) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 470.8
(3)
P 		392.7
(1.4)
P 		243
(-1.5)
P 		168.8
(-3)
P 		230.2
(-1.8)
P 		330
(0.2)
P 		302
B 389.9
(3)
P 		341.6
(1.6)
P 		259.2
(-0.8)
P 		265
(-0.6)
P 		183.3
(-3)
P 		330.8
(1.3)
P 		207
C 405.1
(3)
P 		355
(1.5)
P 		308.9
(0.1)
P 		238.2
(-2)
P 		204.7
(-3)
P 		364.6
(1.8)
P 		200
avr 421.9
(3) 		363.1
(1.4) 		270.4
(-1.2) 		224
(-2.5) 		206.1
(-3) 		341.8
(0.8) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 128.1
(3)
P 		58.5
(-2.7)
P 		61.3
(-2.5)
P 		55
(-3)
P 		73
B 145.3
(3)
P 		66.7
(-2.7)
P 		63.1
(-3)
P 		80.7
(-1.7)
P 		82
C 147.7
(3)
P 		79.8
(-2.8)
P 		79
(-2.9)
P 		77.9
(-3)
P 		70
avr 140.4
(3) 		68.3
(-3) 		67.8
(-3) 		71.2
(-2.7) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 86.8
(-0.3)
P 		139.6
(3)
P 		52.9
(-2.4)
P 		42.8
(-3)
P 		69.5
(-1.3)
P 		80.3
(-0.7)
P 		97
B 135.6
(3)
P 		113.7
(1.2)
P 		63
(-3)
P 		70.2
(-2.4)
P 		74.5
(-2)
P 		123.4
(2)
P 		73
C 150.2
(3)
P 		108.3
(0.5)
P 		78.6
(-1.2)
P 		47.9
(-3)
P 		66.2
(-1.9)
P 		122.1
(1.4)
P 		102
avr 124.2
(3) 		120.5
(2.7) 		64.8
(-2) 		53.6
(-3) 		70.1
(-1.6) 		108.6
(1.7) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172005_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19662
Sequence Type Exemplar sequence
Representative Public ID 987520 NCBI
Target Description g987520 /REP_DB=GenBank Identifier /GB=U33051.1 /PROTEIN_GB=AAA85507.1 /CHR=1 /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026292(11), NM_061174(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026292 NCBI Caenorhabditis elegans SUppressor of activated let-60 Ras family member (sur-2) (sur-2) mRNA, complete cds. 11/11 None
NM_061174 NCBI Caenorhabditis elegans SUppressor of activated let-60 Ras family member (sur-2) (sur-2) mRNA, complete cds. 11/11 A 
SNAP00000018504 ENSEMBL cdna:SNAP chromosome:CEL140:I:14785395:14795914:-1 11/11 None
GENEFINDER00000018516 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14785395:14791997:-1 11/11 None
F39B2.4b ENSEMBL cdna:known chromosome:CEL140:I:14785323:14795914:-1 gene:F39B2.4 11/11 A 
F39B2.4a ENSEMBL cdna:known chromosome:CEL140:I:14785395:14795914:-1 gene:F39B2.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020463 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14785203-14795854(-) 97.41 99.92
Public Domain and Genome References
Ensembl F39B2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07394 Hypothetical protein F39B2.4b [Caenorhabditis elegans] ref|NP_001021463.1| SUppressor of activated let-60 Ras family member (sur-2) [Caenorhabditis elegans] 0.0
blast CAB07385 Hypothetical protein F39B2.4a [Caenorhabditis elegans] ref|NP_493575.2| SUppressor of activated let-60 Ras family member (sur-2) [Caenorhabditis elegans] sp|Q10669|SUR2_CAEEL Protein sur-2 gb|AAA85507.1| sur-2 gene product 0.0
blast T21993 hypothetical protein F39B2.4b - Caenorhabditis elegans 0.0
blast T21986 hypothetical protein F39B2.4a - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:172005_X_AT
atcatctacaacaagcaccactactaccatcacatcaaatgatgcctccaccacaacaac
attcatcctcacttcaacatcatctacaacatcatacatctacacatcaaatgatggata
catcacaacatcagacaattcaacaacaatcaaatcatcctactcaacaacaacttcaac
atcaaattccgaatatgtcgatgcatcaacaaatgggacctcaatatcctggtgcagttt
ttcatcatccatctggacctgtgggacatgtcccaatgcaatatggaatgggacatcata
tgcaacagcacccacatcttccacatcatcagcaaatgccggcacctatgcatacaatga
atcctatgatgcaaaacatgactcctcaacagcaatatctctacatgcaacaacttcaac
aacatcagcaacatcaacagtacatgcaacagcaacaacagcatcaccatcaacaccaac
agcaacctcattaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATCTACAACAAGCACCACTACT 5 31 4292 Antisense
CTCACTTCAACATCATCTACAACAT 87 229 4359 Antisense
CAAATCATCCTACTCAACAACAACT 475 193 4442 Antisense
ATGGGACCTCAATATCCTGGTGCAG 398 49 4504 Antisense
ATCCTGGTGCAGTTTTTCATCATCC 523 39 4517 Antisense
CATCCATCTGGACCTGTGGGACATG 179 211 4537 Antisense
ATCATATGCAACAGCACCCACATCT 237 29 4586 Antisense
ATCAGCAAATGCCGGCACCTATGCA 248 27 4619 Antisense
GACTCCTCAACAGCAATATCTCTAC 285 375 4671 Antisense
CAGCAACAACAGCATCACCATCAAC 453 203 4741 Antisense
TCAACACCAACAGCAACCTCATTAA 72 631 4761 Antisense
Sequence Source GenBank