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[172004_x_at]

Description g439983 /REP_DB=GenBank Identifier /GB=U04711.1 /PROTEIN_GB=AAA81899.1 /CHR=1 /FEA=Mapped Transcript
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 06      6grp_total > 92      4grp_total > 59      6grp_highest_sub > 04_05      6grp_cgc > 97      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8504
1 2 3 4 range
A 6958.8
(0.7)
P 		8283.9
(1.7)
P 		9886
(3)
P 		2282.7
(-3)
P 		7603
B 7583.4
(1.3)
P 		9715.9
(3)
P 		7983.1
(1.6)
P 		2373.2
(-3)
P 		7343
C 7900.2
(1.3)
P 		10375.2
(3)
P 		9817.6
(2.6)
P 		1871.3
(-3)
P 		8504
avr 7480.8
(1.4) 		9458.3
(3) 		9228.9
(2.8) 		2175.7
(-3) 		7283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4576
1 2 3 4 5 6 range
A 11123.8
(3)
P 		9098.7
(-0.1)
P 		8817.8
(-0.5)
P 		9447.9
(0.5)
P 		10554.4
(2.1)
P 		7154.7
(-3)
P 		3969
B 7553.4
(-1.4)
P 		9160.8
(1.3)
P 		8062.9
(-0.5)
P 		9900.2
(2.5)
P 		10215.7
(3)
P 		6547.7
(-3)
P 		3668
C 9232
(0.1)
P 		8905.8
(-0.5)
P 		9747.5
(1.2)
P 		9985.6
(1.6)
P 		10664.7
(3)
P 		7665.6
(-3)
P 		2999
avr 9303.1
(0.9) 		9055.1
(0.5) 		8876.1
(0.1) 		9777.9
(1.7) 		10478.3
(3) 		7122.7
(-3) 		3356
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3106
1 2 3 4 range
A 2533.7
(2.9)
P 		1798.2
(0.9)
P 		2584.4
(3)
P 		334.1
(-3)
P 		2250
B 2418.3
(3)
P 		2399.6
(2.9)
P 		1849.9
(1.2)
P 		505.7
(-3)
P 		1913
C 2615.2
(1.4)
P 		2982.9
(2.2)
P 		3421.8
(3)
P 		315.5
(-3)
P 		3106
avr 2522.4
(2.7) 		2393.6
(2.4) 		2618.7
(3) 		385.1
(-3) 		2234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2409
1 2 3 4 5 6 range
A 2050.6
(-1.8)
P 		3236
(3)
P 		1920.3
(-2.3)
P 		2396.2
(-0.4)
P 		3184.9
(2.8)
P 		1741.9
(-3)
P 		1494
B 2628.2
(-1.2)
P 		3049.3
(-0)
P 		1957.9
(-3)
P 		2622.2
(-1.2)
P 		4150.5
(3)
P 		2441.6
(-1.7)
P 		2193
C 3421.9
(2.9)
P 		2717.4
(-0.1)
P 		2480.9
(-1)
P 		2008.1
(-3)
P 		3450.9
(3)
P 		2566.1
(-0.7)
P 		1443
avr 2700.2
(-0.6) 		3000.9
(0.6) 		2119.7
(-3) 		2342.2
(-2.1) 		3595.4
(3) 		2249.9
(-2.5) 		1476
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172004_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19683
Sequence Type Exemplar sequence
Representative Public ID 439983 NCBI
Target Description g439983 /REP_DB=GenBank Identifier /GB=U04711.1 /PROTEIN_GB=AAA81899.1 /CHR=1 /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025923(11), NM_001025922(11), NM_001025921(9), U04711(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025923 NCBI Caenorhabditis elegans UNCoordinated family member (unc-87) (unc-87) mRNA, complete cds. 11/11 None
NM_001025922 NCBI Caenorhabditis elegans UNCoordinated family member (unc-87) (unc-87) mRNA, complete cds. 11/11 None
NM_001025921 NCBI Caenorhabditis elegans UNCoordinated family member (unc-87) (unc-87) mRNA, complete cds. 9/11 None
U04711 NCBI Caenorhabditis elegans N2 (unc-87) mRNA, complete cds. 11/11 A 
SNAP00000014331 ENSEMBL cdna:SNAP chromosome:CEL140:I:6769901:6773744:-1 9/11 None
F08B6.4c.3 ENSEMBL cdna:known chromosome:CEL140:I:6769362:6775931:-1 gene:F08B6.4 11/11 A 
F08B6.4c.2 ENSEMBL cdna:known chromosome:CEL140:I:6769362:6773745:-1 gene:F08B6.4 11/11 A 
F08B6.4c.1 ENSEMBL cdna:known chromosome:CEL140:I:6769362:6773846:-1 gene:F08B6.4 11/11 A 
F08B6.4b.1 ENSEMBL cdna:known chromosome:CEL140:I:6769701:6775931:-1 gene:F08B6.4 11/11 None
F08B6.4a ENSEMBL cdna:known chromosome:CEL140:I:6769901:6773744:-1 gene:F08B6.4 9/11 A 
F08B6.4b.2 ENSEMBL cdna:known chromosome:CEL140:I:6769901:6775933:-1 gene:F08B6.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014336 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014337 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6769629-6772863(-) 100.0 100.0
Public Domain and Genome References
Ensembl F08B6.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT68897 Uncoordinated protein 87, isoform c [Caenorhabditis elegans] ref|NP_001021094.1| UNCoordinated family member (unc-87) [Caenorhabditis elegans] 0.0
blast AAC78234 Uncoordinated protein 87, isoform a [Caenorhabditis elegans] ref|NP_001021092.1| UNCoordinated family member (unc-87) [Caenorhabditis elegans] pir||T33851 thin filament-associated protein UNC-87, long form - Caenorhabditis elegans gb|AAA81902.1| one of two alternatively spliced products 0.0
blast P37806 Uncoordinated protein 87 (Protein unc-87) 0.0
blast AAK68303 Uncoordinated protein 87, isoform b [Caenorhabditis elegans] ref|NP_001021093.1| UNCoordinated family member (unc-87) [Caenorhabditis elegans] gb|AAA81901.1| uses the first of two potential start codons; second of two alternatively spliced products gb|AAA81899.1| uses first of two potential start sites 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000557 EMBL-EBI Calponin repeat 1.4E-4
Pfam IPR000557 EMBL-EBI Calponin repeat 2.3E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 4.2E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 1.0E-10
Pfam IPR000557 EMBL-EBI Calponin repeat 5.5E-9
Pfam IPR000557 EMBL-EBI Calponin repeat 3.8E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 7.0E-5
Pfam IPR000557 EMBL-EBI Calponin repeat 1.4E-4
Pfam IPR000557 EMBL-EBI Calponin repeat 2.3E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 4.2E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 1.0E-10
Pfam IPR000557 EMBL-EBI Calponin repeat 5.5E-9
Pfam IPR000557 EMBL-EBI Calponin repeat 3.8E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 7.0E-5
Pfam IPR000557 EMBL-EBI Calponin repeat 1.4E-4
Pfam IPR000557 EMBL-EBI Calponin repeat 2.3E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 4.2E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 1.0E-10
Pfam IPR000557 EMBL-EBI Calponin repeat 5.5E-9
Pfam IPR000557 EMBL-EBI Calponin repeat 3.8E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 7.0E-5
Pfam IPR000557 EMBL-EBI Calponin repeat 1.4E-4
Pfam IPR000557 EMBL-EBI Calponin repeat 2.3E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 4.2E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 1.0E-10
Pfam IPR000557 EMBL-EBI Calponin repeat 5.5E-9
Pfam IPR000557 EMBL-EBI Calponin repeat 3.8E-8
Pfam IPR000557 EMBL-EBI Calponin repeat 7.0E-5
Sequence
Target Sequence 
>C. ELEGANS:172004_X_AT
tcaaaccacaattccatctcagatgggatctaatcaatatgcttcacagaagggtatgac
tggattcggacagccacgttgggaagttctcgacccatcaatctcatggcaaaaccgtaa
atcccagggaatggtccgtcttcaatctggtaccaaccgttttgcttctcaagctggtat
gattggcttcggaacatgcagaaacacaacattcgaggctgaaggaggagagcttccata
tgaggcaatgaaggtgtctgagaccatcattccaagtcaagctggatggaacaagggaga
ctcacagaagaagatgacatcattcggagcaccacgtgacgttaagggcaagcacttgaa
gagaatctgggagcttgaatacccagaagaggctgaaatctctttggatcgtctctaaat
catttttctccgtgtttttttttctttcgtaaattacatgatacctgtgcataatttgct
tcaacttcttctccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAACCACAATTCCATCTCAGATG 526 629 690 Antisense
ATGACTGGATTCGGACAGCCACGTT 37 39 745 Antisense
GCCACGTTGGGAAGTTCTCGACCCA 626 279 762 Antisense
TCTCGACCCATCAATCTCATGGCAA 364 611 777 Antisense
AATGGTCCGTCTTCAATCTGGTACC 8 161 819 Antisense
ATCTGGTACCAACCGTTTTGCTTCT 203 23 834 Antisense
GTGTCTGAGACCATCATTCCAAGTC 551 485 943 Antisense
ATCATTCGGAGCACCACGTGACGTT 284 31 1008 Antisense
GGCTGAAATCTCTTTGGATCGTCTC 704 539 1080 Antisense
GATCGTCTCTAAATCATTTTTCTCC 14 419 1096 Antisense
TAATTTGCTTCAACTTCTTCTCCAA 323 635 1161 Antisense
Sequence Source GenBank