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[172003_x_at] galaptin domain

Description g9857650 /REP_DB=GenBank Identifier /GB=AB038777.1 /PROTEIN_GB=BAB11972.1 /CHR=X /FEA=Mapped Transcript
Cluster 6grp_high1_10_10 > 36      6grp_total > 36      4grp_total > 11      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 48.3
(-1.9)
A 		90.1
(-0.4)
A 		17.1
(-3)
A 		185.2
(3)
P 		168
B 69
(-1.3)
P 		81
(-0.7)
A 		33.8
(-3)
A 		158.1
(3)
P 		124
C 58.5
(-1.4)
P 		6.8
(-3)
A 		23.4
(-2.5)
A 		204.1
(3)
P 		197
avr 58.6
(-1.7) 		59.3
(-1.7) 		24.8
(-3) 		182.5
(3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 146.7
(3)
P 		144.6
(2.9)
P 		77.3
(-1.4)
P 		57.2
(-2.6)
A 		51.1
(-3)
A 		81.2
(-1.1)
P 		96
B 174.3
(3)
P 		133.2
(0.4)
P 		79.4
(-3)
P 		93
(-2.1)
P 		78.8
(-3)
P 		150.3
(1.5)
P 		96
C 190.5
(3)
P 		163.9
(1.9)
P 		93.7
(-1.2)
P 		50.8
(-3)
A 		64.5
(-2.4)
P 		164.8
(1.9)
P 		140
avr 170.5
(3) 		147.2
(1.7) 		83.5
(-1.9) 		67
(-2.9) 		64.8
(-3) 		132.1
(0.8) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 17.6
(0.5)
A 		19.6
(1)
A 		4.5
(-3)
A 		27.1
(3)
P 		23
B 22
(0.3)
P 		20
(-0.2)
A 		7.8
(-3)
A 		33.7
(3)
P 		26
C 19.4
(0.2)
P 		2
(-3)
A 		8.2
(-1.9)
A 		34.4
(3)
P 		32
avr 19.7
(0.1) 		13.9
(-1.3) 		6.8
(-3) 		31.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 27
(-1)
P 		51.4
(3)
P 		16.8
(-2.6)
P 		14.5
(-3)
A 		15.4
(-2.9)
A 		19.8
(-2.1)
P 		37
B 60.6
(3)
P 		44.3
(0.6)
P 		19.3
(-3)
P 		24.6
(-2.2)
P 		32
(-1.2)
P 		56
(2.3)
P 		41
C 70.6
(3)
P 		50
(1)
P 		23.9
(-1.6)
P 		10.2
(-3)
A 		20.9
(-1.9)
P 		55.2
(1.5)
P 		60
avr 52.7
(3) 		48.6
(2.3) 		20
(-2.4) 		16.4
(-3) 		22.8
(-1.9) 		43.7
(1.5) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172003_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19953
Sequence Type Exemplar sequence
Representative Public ID 9857650 NCBI
Target Description g9857650 /REP_DB=GenBank Identifier /GB=AB038777.1 /PROTEIN_GB=BAB11972.1 /CHR=X /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077249(11), AB038779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077249 NCBI Caenorhabditis elegans gaLECtin family member (lec-7) (lec-7) mRNA, complete cds. 11/11 A 
AB038779 NCBI Caenorhabditis elegans lec-7 mRNA, complete cds, splicing variant lec-7c. 11/11 None
SNAP00000020686 ENSEMBL cdna:SNAP chromosome:CEL140:X:9852164:9852840:1 9/11 None
GENEFINDER00000020711 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9852164:9852840:1 9/11 None
R07B1.2.2 ENSEMBL cdna:known chromosome:CEL140:X:9852070:9852840:1 gene:R07B1.2 11/11 A 
R07B1.2.1 ENSEMBL cdna:known chromosome:CEL140:X:9852070:9852840:1 gene:R07B1.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9852069-9852514(+) 100.0 100.0
Public Domain and Genome References
Gene Title galaptin domain
Gene Symbol lec-7
Ensembl R07B1.2
Entrez Gene 181199 Entrez gene
SwissProt Q09605 EMBL-EBI
WormBase CE26722 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88540 Hypothetical protein R07B1.2 [Caenorhabditis elegans] ref|NP_509650.3| gaLECtin family member (lec-7) [Caenorhabditis elegans] sp|Q09605|LEC7_CAEEL Probable galaptin lec-7 1.0E-101
blast T23993 hypothetical protein R07B1.2 - Caenorhabditis elegans 1.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 3.6E-59
Sequence
Target Sequence 
>C. ELEGANS:172003_X_AT
tggttcgcaaccgggagcacaaaaacaagttgaaacaactattcgagacaacatgtatgt
tattgaaaacccgaaagttccgagtgtgtatcaaattgaggaaaacctaaaagcaggcgt
tgaaattgaagtaaatggagctgttttgcatgggaatgacagggattttgcaatcgaact
tctcagtggtaccaatatagttctccatgttaaatttgagttcaatggagaacattcaat
tgttttgaacagtctaataaatggcgaatggggccctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTTCGCAACCGGGAGCACAAAAA 695 543 14 Antisense
GAAACAACTATTCGAGACAACATGT 559 355 45 Antisense
TGAAAACCCGAAAGTTCCGAGTGTG 429 569 77 Antisense
GTTCCGAGTGTGTATCAAATTGAGG 80 441 90 Antisense
TGGAGCTGTTTTGCATGGGAATGAC 557 545 149 Antisense
TGGGAATGACAGGGATTTTGCAATC 130 555 164 Antisense
GGATTTTGCAATCGAACTTCTCAGT 429 507 176 Antisense
ATCGAACTTCTCAGTGGTACCAATA 182 35 186 Antisense
GGTACCAATATAGTTCTCCATGTTA 340 505 201 Antisense
AGTTCTCCATGTTAAATTTGAGTTC 695 63 212 Antisense
TAATAAATGGCGAATGGGGCCCTCA 532 625 268 Antisense
Sequence Source GenBank