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[172002_x_at]

Description g9857654 /REP_DB=GenBank Identifier /GB=AB038779.1 /PROTEIN_GB=BAB11974.1 /CHR=X /FEA=Mapped Transcript
Cluster 6grp_total > 36      4grp_total > 02      6grp_cgc > 25      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 42.6
(-0.5)
A 		3.6
(-3)
A 		18.7
(-2)
A 		98.2
(3)
A 		95
B 36.3
(-2.9)
A 		34.8
(-3)
A 		41.1
(-2.6)
A 		119.6
(3)
P 		85
C 16
(-3)
A 		46.4
(-1.1)
A 		32.1
(-2)
P 		110.6
(3)
M 		95
avr 31.6
(-2.8) 		28.3
(-3) 		30.6
(-2.8) 		109.5
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 93.3
(3)
P 		80
(1.9)
A 		79.7
(1.8)
A 		50.7
(-0.6)
P 		22.6
(-3)
A 		71.2
(1.1)
A 		71
B 76.3
(1.1)
P 		94.6
(3)
A 		40.9
(-2.6)
A 		47.9
(-1.9)
A 		37
(-3)
A 		78
(1.3)
P 		58
C 72.7
(1.8)
P 		72.5
(1.8)
M 		49.9
(-1)
A 		82.2
(3)
M 		34.3
(-3)
A 		69.6
(1.4)
A 		48
avr 80.8
(2.8) 		82.4
(3) 		56.8
(-0) 		60.3
(0.4) 		31.3
(-3) 		72.9
(1.9) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 15.5
(3)
A 		0.8
(-3)
A 		4.9
(-1.3)
A 		14.4
(2.6)
A 		15
B 11.6
(-1.9)
A 		8.6
(-3)
A 		9.5
(-2.7)
A 		25.5
(3)
P 		17
C 5.3
(-3)
A 		13.3
(0.6)
A 		11.2
(-0.3)
P 		18.6
(3)
M 		13
avr 10.8
(-1.4) 		7.6
(-3) 		8.5
(-2.5) 		19.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 17.2
(-0.1)
P 		28.4
(3)
A 		17.4
(-0.1)
A 		12.9
(-1.3)
P 		6.8
(-3)
A 		17.3
(-0.1)
A 		22
B 26.6
(1.6)
P 		31.5
(3)
A 		9.9
(-3)
A 		12.7
(-2.2)
A 		15
(-1.6)
A 		29.1
(2.3)
P 		22
C 26.9
(3)
P 		22.1
(1.2)
M 		12.7
(-2.4)
A 		16.5
(-0.9)
M 		11.1
(-3)
A 		23.3
(1.6)
A 		16
avr 23.6
(1.6) 		27.3
(3) 		13.3
(-2.2) 		14
(-1.9) 		11
(-3) 		23.2
(1.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172002_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19989
Sequence Type Exemplar sequence
Representative Public ID 9857654 NCBI
Target Description g9857654 /REP_DB=GenBank Identifier /GB=AB038779.1 /PROTEIN_GB=BAB11974.1 /CHR=X /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) AB038779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AB038779 NCBI Caenorhabditis elegans lec-7 mRNA, complete cds, splicing variant lec-7c. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077249 8/11 Cross Hyb Matching Probes A 
SNAP00000020686 6/11 Cross Hyb Matching Probes None
GENEFINDER00000020711 6/11 Cross Hyb Matching Probes None
R07B1.2.2 8/11 Cross Hyb Matching Probes A 
R07B1.2.1 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9852069-9852514(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172002_X_AT
tggttcgcaaccgggagcacaaaaacaaggtgaaaagtataaaaagtgagaaaaaaatgg
ttaagttaagttgaaacaactattcgagacaacatgtatgttattgaaaacccggtaagt
agactgttttgtaagtttttcagtgccttgaaatttttcagaaagttccgagtgtgtatc
aaattgaggaaaacctaaaagcaggcgttgaaattgaagtaaatggagctgttttgcatg
ggaatgacagggattttgcaatcgaacttctcagtggtaccaatatagttctccatgtta
aatttgagttcaatggagaacattcaattgttttgaacagtctaataaatggcgaatggg
gccctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTTCGCAACCGGGAGCACAAAAA 696 543 14 Antisense
GAAACAACTATTCGAGACAACATGT 560 355 86 Antisense
TATTGAAAACCCGGTAAGTAGACTG 39 653 115 Antisense
GTTTTGTAAGTTTTTCAGTGCCTTG 424 447 139 Antisense
TTTTCAGTGCCTTGAAATTTTTCAG 114 675 150 Antisense
GAAAGTTCCGAGTGTGTATCAAATT 654 359 174 Antisense
TGGAGCTGTTTTGCATGGGAATGAC 559 545 237 Antisense
GGATTTTGCAATCGAACTTCTCAGT 430 507 264 Antisense
ATCGAACTTCTCAGTGGTACCAATA 183 35 274 Antisense
GGTACCAATATAGTTCTCCATGTTA 341 505 289 Antisense
TAATAAATGGCGAATGGGGCCCTCA 531 625 356 Antisense
Sequence Source GenBank