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[172001_x_at]

Description g1208412 /REP_DB=GenBank Identifier /GB=D38540.1 /PROTEIN_GB=BAA07543.1 /CHR=1 /FEA=Mapped Transcript /DEF=CeTMI
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 01      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 16      6grp_total > 04      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 70      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6313
1 2 3 4 range
A 8037.6
(1.8)
P 		9310.8
(3)
P 		8615.7
(2.3)
P 		3163.8
(-3)
P 		6147
B 9188.8
(2.7)
P 		8186.2
(1.7)
P 		9476.8
(3)
P 		3348.2
(-3)
P 		6129
C 7256.5
(1.4)
P 		8653.4
(3)
P 		7528.5
(1.7)
P 		3385.2
(-3)
P 		5268
avr 8161
(2.4) 		8716.8
(3) 		8540.3
(2.8) 		3299.1
(-3) 		5418

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7589
1 2 3 4 5 6 range
A 9499.4
(3)
P 		8654.9
(1.8)
P 		8830.1
(2.1)
P 		6647.8
(-0.9)
P 		8382.9
(1.5)
P 		5098.5
(-3)
P 		4401
B 10906.9
(3)
P 		7484.9
(0)
P 		8267.3
(0.7)
P 		8407.8
(0.8)
P 		8202.6
(0.7)
P 		3970
(-3)
P 		6937
C 9468
(3)
P 		8049
(1.6)
P 		8211.3
(1.8)
P 		6574.1
(0.2)
P 		8452
(2)
P 		3317.8
(-3)
P 		6150
avr 9958.1
(3) 		8062.9
(1) 		8436.2
(1.4) 		7209.9
(0.2) 		8345.8
(1.3) 		4128.8
(-3) 		5829
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2467
1 2 3 4 range
A 2926.5
(3)
P 		2021.1
(0.8)
P 		2252.3
(1.4)
P 		463.1
(-3)
P 		2463
B 2930.2
(3)
P 		2021.8
(0.5)
P 		2196
(1)
P 		713.5
(-3)
P 		2217
C 2402.1
(2.4)
P 		2487.9
(2.6)
P 		2623.9
(3)
P 		570.8
(-3)
P 		2053
avr 2752.9
(3) 		2176.9
(1.4) 		2357.4
(1.9) 		582.5
(-3) 		2170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2684
1 2 3 4 5 6 range
A 1751.1
(-1.3)
P 		3078.1
(3)
P 		1923
(-0.8)
P 		1686
(-1.5)
P 		2529.6
(1.2)
P 		1241.3
(-3)
P 		1837
B 3795.1
(3)
P 		2491.4
(-0.4)
P 		2007.5
(-1.6)
P 		2226.9
(-1.1)
P 		3332.6
(1.8)
P 		1480.4
(-3)
P 		2315
C 3509.4
(3)
P 		2456
(0.4)
P 		2089.9
(-0.6)
P 		1322
(-2.5)
P 		2734.9
(1.1)
P 		1110.7
(-3)
P 		2399
avr 3018.5
(3) 		2675.2
(1.8) 		2006.8
(-0.5) 		1745
(-1.4) 		2865.7
(2.5) 		1277.5
(-3) 		1741
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172001_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19660
Sequence Type Exemplar sequence
Representative Public ID 1208412 NCBI
Target Description g1208412 /REP_DB=GenBank Identifier /GB=D38540.1 /PROTEIN_GB=BAA07543.1 /CHR=1 /FEA=Mapped Transcript /DEF=CeTMI
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026524(11), NM_001026529(9), NM_001026528(11), NM_001026526(11), NM_001026525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026524 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
NM_001026529 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 9/11 None
NM_001026528 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
NM_001026526 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
NM_001026525 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
Y105E8B.1a.1 ENSEMBL cdna:known chromosome:CEL140:I:14628878:14639077:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1a.2 ENSEMBL cdna:known chromosome:CEL140:I:14628939:14639077:-1 gene:Y105E8B.1 10/11 A 
Y105E8B.1e.2 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633555:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1e.3 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633553:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1f ENSEMBL cdna:known chromosome:CEL140:I:14629059:14639372:-1 gene:Y105E8B.1 9/11 A 
Y105E8B.1e.1 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633555:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1c ENSEMBL cdna:known chromosome:CEL140:I:14629281:14633553:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:14629292:14639190:-1 gene:Y105E8B.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026527 4/11 Cross Hyb Matching Probes None
GENEFINDER00000011752 6/11 Cross Hyb Matching Probes None
SNAP00000011730 1/11 Cross Hyb Matching Probes None
Y105E8B.1b.3 4/11 Cross Hyb Matching Probes B 
Y105E8B.1b.1 4/11 Cross Hyb Matching Probes None
Y105E8B.1b.4 4/11 Cross Hyb Matching Probes None
Y105E8B.1d 4/11 Cross Hyb Matching Probes B 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173319 6 5 NM_001026524 172001_x_at (11), 194257_x_at (11)
NM_001026525 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026526 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026528 171997_x_at (11), 172001_x_at (11), 175734_s_at (11), 176396_s_at (11), 194257_x_at (11)
NM_001026529 172001_x_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14629222-14639073(-) 98.97 98.97
Public Domain and Genome References
Ensembl Y105E8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70114 Hypothetical protein Y105E8B.1a [Caenorhabditis elegans] ref|NP_001021695.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] sp|Q22866|TPM1_CAEEL Tropomyosin isoforms 1/2 dbj|BAA07543.1| CeTMI [Caenorhabditis elegans] 1.0E-129
blast BAA07540.1 CeTMI [Caenorhabditis elegans] 1.0E-127
blast A44980 tropomyosin, obliquely striated muscle - nematode (Trichostrongylus colubriformis) 1.0E-123
blast CAC70115 Hypothetical protein Y105E8B.1c [Caenorhabditis elegans] ref|NP_001021697.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] gb|AAG10302.1| tropomyosin isoform IV [Caenorhabditis elegans] 4.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR000533 EMBL-EBI Tropomyosin 1.0E-126
Pfam IPR000533 EMBL-EBI Tropomyosin 9.5E-23
Pfam IPR000533 EMBL-EBI Tropomyosin 1.6E-121
Pfam IPR000533 EMBL-EBI Tropomyosin 3.6E-100
Pfam IPR000533 EMBL-EBI Tropomyosin 2.0E-109
Sequence
Target Sequence 
>C. ELEGANS:172001_X_AT
agaaggctctccaacgtgaggactcgtacgaggagcagatccgcaccgtctcatccagac
tgaaggaggctgagacccgtgccgaattcgctgagcgttccgtccagaagctccagaagg
aggtcgacagactcgaagacgaattggtgcacgagaaggaacgctacaagaccatctccg
aagaactcgattccaccttccaagagctctccggatattaaacatccatgtcctatcgcg
ttccttttttccccccgcctacttgtattttcgtcacaacatcttatcccccccacccaa
aaacctttgaaaccatcaaaaccactcaaactttcctattttctttacttttttaaatac
tttttataaaagcttcacattatcaactgtttttctctgtgtattcatccccacccctcc
catccaaaaaccaagaattctcttttagcagatgagaagcttcaattgttcttttttctt
tctctctcatgcaaatgttcttcgtttacaagagccggcagctttttttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGGCTCTCCAACGTGAGGACTC 485 73 713 Antisense
GCACCGTCTCATCCAGACTGAAGGA 566 313 755 Antisense
TGAAGGAGGCTGAGACCCGTGCCGA 188 575 773 Antisense
TGCCGAATTCGCTGAGCGTTCCGTC 588 585 792 Antisense
GACCATCTCCGAAGAACTCGATTCC 443 383 882 Antisense
ACCTTCCAAGAGCTCTCCGGATATT 316 71 907 Antisense
TATTTTCGTCACAACATCTTATCCC 38 663 978 Antisense
CTGTTTTTCTCTGTGTATTCATCCC 215 239 1099 Antisense
GCTTCAATTGTTCTTTTTTCTTTCT 407 303 1171 Antisense
TTTTCTTTCTCTCTCATGCAAATGT 379 677 1186 Antisense
ACAAGAGCCGGCAGCTTTTTTTCTT 76 113 1220 Antisense
Sequence Source GenBank