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[171998_x_at]

Description g1237257 /REP_DB=GenBank Identifier /GB=M62830.1 /PROTEIN_GB=AAA93094.1 /CHR=1 /FEA=Mapped Transcript /DEF=UNC-13
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 14      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 31      6grp_total > 14      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1058
1 2 3 4 range
A 1440.6
(3)
P 		584.4
(-2.3)
P 		474.1
(-3)
P 		824.1
(-0.8)
P 		967
B 1491.2
(3)
P 		610.4
(-2)
P 		432.8
(-3)
P 		760
(-1.1)
P 		1058
C 1389.8
(3)
P 		645.3
(-2.3)
P 		540.9
(-3)
P 		724.7
(-1.7)
P 		849
avr 1440.5
(3) 		613.4
(-2.2) 		482.6
(-3) 		769.6
(-1.2) 		958

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1031
1 2 3 4 5 6 range
A 1451.1
(3)
P 		1399.3
(2.6)
P 		846.6
(-1.2)
P 		902.1
(-0.8)
P 		763.6
(-1.8)
P 		592.4
(-3)
P 		859
B 1508.8
(3)
P 		1242.9
(1.3)
P 		821.8
(-1.3)
P 		1028.4
(-0)
P 		548.1
(-3)
P 		581.6
(-2.8)
P 		961
C 1245.8
(2.5)
P 		1313.5
(3)
P 		961.7
(0.5)
P 		963.5
(0.5)
P 		646.9
(-1.8)
P 		477.6
(-3)
P 		836
avr 1401.9
(3) 		1318.6
(2.4) 		876.7
(-0.7) 		964.7
(-0.1) 		652.9
(-2.3) 		550.5
(-3) 		851
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 424
1 2 3 4 range
A 524.5
(3)
P 		126.9
(-2.9)
P 		123.9
(-3)
P 		120.6
(-3)
P 		404
B 475.5
(3)
P 		150.8
(-2.2)
P 		100.3
(-3)
P 		161.9
(-2)
P 		375
C 460.1
(3)
P 		185.5
(-1.9)
P 		188.5
(-1.8)
P 		122.2
(-3)
P 		338
avr 486.7
(3) 		154.4
(-2.7) 		137.6
(-3) 		134.9
(-3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 381
1 2 3 4 5 6 range
A 267.5
(-0.9)
P 		497.7
(3)
P 		184.4
(-2.3)
P 		228.8
(-1.6)
P 		230.4
(-1.5)
P 		144.2
(-3)
P 		354
B 525
(3)
P 		413.7
(0.9)
P 		199.5
(-3)
P 		272.4
(-1.7)
P 		222.7
(-2.6)
P 		216.9
(-2.7)
P 		326
C 461.8
(3)
P 		400.8
(1.8)
P 		244.8
(-1.3)
P 		193.8
(-2.3)
P 		209.3
(-2)
P 		159.9
(-3)
P 		302
avr 418.1
(2.6) 		437.4
(3) 		209.6
(-2.2) 		231.7
(-1.7) 		220.8
(-1.9) 		173.7
(-3) 		264
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171998_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19654
Sequence Type Exemplar sequence
Representative Public ID 1237257 NCBI
Target Description g1237257 /REP_DB=GenBank Identifier /GB=M62830.1 /PROTEIN_GB=AAA93094.1 /CHR=1 /FEA=Mapped Transcript /DEF=UNC-13
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026703(11), NM_001026702(9), NM_001026700(9), NM_001026701(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026703 NCBI Caenorhabditis elegans UNCoordinated family member (unc-13) (unc-13) mRNA, complete cds. 11/11 None
NM_001026702 NCBI Caenorhabditis elegans UNCoordinated family member (unc-13) (unc-13) mRNA, complete cds. 9/11 None
NM_001026700 NCBI Caenorhabditis elegans UNCoordinated family member (unc-13) (unc-13) mRNA, complete cds. 9/11 None
NM_001026701 NCBI Caenorhabditis elegans UNCoordinated family member (unc-13) (unc-13) mRNA, complete cds. 9/11 None
GENEFINDER00000017083 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7453508:7462030:1 11/11 None
SNAP00000017079 ENSEMBL cdna:SNAP chromosome:CEL140:I:7458440:7461857:1 9/11 None
ZK524.2d ENSEMBL cdna:known chromosome:CEL140:I:7430913:7461857:1 gene:ZK524.2 9/11 A 
ZK524.2e ENSEMBL cdna:known chromosome:CEL140:I:7430913:7462216:1 gene:ZK524.2 11/11 A 
ZK524.2a ENSEMBL cdna:known chromosome:CEL140:I:7430913:7461857:1 gene:ZK524.2 9/11 A 
ZK524.2c ENSEMBL cdna:known chromosome:CEL140:I:7441545:7461857:1 gene:ZK524.2 9/11 A 
ZK524.2b ENSEMBL cdna:known chromosome:CEL140:I:7451297:7461857:1 gene:ZK524.2 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7430724-7461909(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK524.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE11299 Hypothetical protein ZK524.2e [Caenorhabditis elegans] emb|CAE11317.1| Hypothetical protein ZK524.2e [Caenorhabditis elegans] emb|CAE11294.1| Hypothetical protein ZK524.2e [Caenorhabditis elegans] ref|NP_001021874.1| UNCoordinated family member (unc-13) [Caenorhabditis elegans] 0.0
blast CAB01966 Hypothetical protein ZK524.2a [Caenorhabditis elegans] emb|CAA98147.1| Hypothetical protein ZK524.2a [Caenorhabditis elegans] emb|CAB07173.1| Hypothetical protein ZK524.2a [Caenorhabditis elegans] ref|NP_001021871.1| UNCoordinated family member (unc-13) [Caenorhabditis elegans] 0.0
blast AAA93094 UNC-13 0.0
blast CAD90170 Hypothetical protein ZK524.2d [Caenorhabditis elegans] emb|CAD90190.2| Hypothetical protein ZK524.2d [Caenorhabditis elegans] emb|CAD90173.2| Hypothetical protein ZK524.2d [Caenorhabditis elegans] ref|NP_001021873.1| UNCoordinated family member (unc-13) [Caenorhabditis elegans] sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 (Uncoordinated protein 13) 0.0
blast CAD56619 Hypothetical protein ZK524.2c [Caenorhabditis elegans] emb|CAD56561.2| Hypothetical protein ZK524.2c [Caenorhabditis elegans] ref|NP_001021872.1| UNCoordinated family member (unc-13) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 9.0E-79
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.8E-74
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.1E-23
Pfam IPR000008 EMBL-EBI C2 domain 2.1E-6
Pfam IPR000008 EMBL-EBI C2 domain 5.8E-32
Pfam IPR000008 EMBL-EBI C2 domain 2.4E-17
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 9.0E-79
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.8E-74
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.1E-23
Pfam IPR000008 EMBL-EBI C2 domain 5.8E-32
Pfam IPR000008 EMBL-EBI C2 domain 2.4E-17
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 9.0E-79
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.8E-74
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.1E-23
Pfam IPR000008 EMBL-EBI C2 domain 5.8E-32
Pfam IPR000008 EMBL-EBI C2 domain 2.4E-17
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 9.0E-79
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.8E-74
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.1E-23
Pfam IPR000008 EMBL-EBI C2 domain 5.8E-32
Pfam IPR000008 EMBL-EBI C2 domain 2.4E-17
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 9.0E-79
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.8E-74
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.1E-23
Pfam IPR000008 EMBL-EBI C2 domain 5.8E-32
Pfam IPR000008 EMBL-EBI C2 domain 2.4E-17
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 3.0E-35
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.8E-74
Pfam IPR000008 EMBL-EBI C2 domain 2.4E-17
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 9.0E-79
Pfam IPR010439 EMBL-EBI Protein of unknown function DUF1041 2.8E-74
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.1E-23
Pfam IPR000008 EMBL-EBI C2 domain 5.8E-32
Pfam IPR000008 EMBL-EBI C2 domain 2.4E-17
Sequence
Target Sequence 
>C. ELEGANS:171998_X_AT
tccttgccgcaaacgatcttcgatggcaaacctcgtcagctttcaaaccatttgttgaag
tgcatcttgtcggaccacatctttcagacaaaaagagaaaatggtcgacaaagaccaaag
caggcaactgggctccaaaattcaacgaaacttttcatttcttccttggaaatgaaggag
aacctgaacattacgagcttatgtttcaagtcaaggattactgttttgcacgagatgatc
gagttgttggagttggagttctgcagttatcatctgtcgttgatcaagcgggatcctgcg
ccatgtgggttcaacttggaactcgactgcatatcgacgagactgggctcattttgctca
ggattctttcacagcgtcaaactgatgaggtggcaaaggactttgtacgcctaaaaacgg
aatgccgatacgagacagaaacagtaatggctgcatcagcatcaagtcaaaacatcaatc
gaacatagtgattcaagtgcctttttttgttggattcaaagcaatagagttgttcttcat
tcgatcaattttcatctcctctacgaatacctgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTGCCGCAAACGATCTTCGATG 704 591 5087 Antisense
ATCTTCGATGGCAAACCTCGTCAGC 256 31 5102 Antisense
CCTCGTCAGCTTTCAAACCATTTGT 537 267 5117 Antisense
TCTTGTCGGACCACATCTTTCAGAC 260 617 5151 Antisense
GACCAAAGCAGGCAACTGGGCTCCA 22 383 5199 Antisense
GAGTTCTGCAGTTATCATCTGTCGT 167 399 5342 Antisense
ATCCTGCGCCATGTGGGTTCAACTT 557 39 5379 Antisense
GACGAGACTGGGCTCATTTTGCTCA 570 377 5422 Antisense
TGCTCAGGATTCTTTCACAGCGTCA 134 581 5441 Antisense
CATTCGATCAATTTTCATCTCCTCT 130 217 5624 Antisense
TCATCTCCTCTACGAATACCTGTAC 151 621 5638 Antisense
Sequence Source GenBank