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[171997_x_at]

Description g871838 /REP_DB=GenBank Identifier /GB=D38542.1 /PROTEIN_GB=BAA07545.1 /CHR=1 /FEA=Mapped Transcript /DEF=CeTMIII
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 14      6grp_total > 14      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3044
1 2 3 4 range
A 5911.5
(3)
P 		4011.2
(-0.8)
P 		2899.5
(-3)
P 		3101.7
(-2.6)
P 		3012
B 5725.4
(3)
P 		3392.5
(-2.6)
P 		3274.1
(-2.9)
P 		3236.7
(-3)
P 		2489
C 5552.2
(3)
P 		3718.2
(-1.1)
P 		2867.9
(-3)
P 		3095.1
(-2.5)
P 		2684
avr 5729.7
(3) 		3707.3
(-1.5) 		3013.8
(-3) 		3144.5
(-2.7) 		2716

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5519
1 2 3 4 5 6 range
A 5588.7
(3)
P 		5153.5
(2.4)
P 		4184.1
(0.9)
P 		2224.5
(-2)
P 		2732.1
(-1.2)
P 		1526.9
(-3)
P 		4062
B 6202
(3)
P 		5240.9
(1.8)
P 		4803.3
(1.2)
P 		2709.2
(-1.5)
P 		2617.1
(-1.6)
P 		1573.9
(-3)
P 		4628
C 6756.4
(3)
P 		4583.8
(0.6)
P 		3597.8
(-0.4)
P 		2262.2
(-1.9)
P 		2680.6
(-1.4)
P 		1237.2
(-3)
P 		5519
avr 6182.4
(3) 		4992.7
(1.5) 		4195.1
(0.5) 		2398.6
(-1.8) 		2676.6
(-1.4) 		1446
(-3) 		4736
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1698
1 2 3 4 range
A 2152.4
(3)
P 		870.7
(-1.5)
P 		758
(-1.9)
P 		454
(-3)
P 		1698
B 1825.8
(3)
P 		837.9
(-2.2)
P 		758.7
(-2.6)
P 		689.8
(-3)
P 		1136
C 1837.9
(3)
P 		1069
(-0.5)
P 		999.6
(-0.8)
P 		521.9
(-3)
P 		1316
avr 1938.7
(3) 		925.9
(-1.4) 		838.8
(-1.8) 		555.2
(-3) 		1384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2133
1 2 3 4 5 6 range
A 1030.2
(-0.3)
P 		1832.9
(3)
P 		911.2
(-0.8)
P 		564.2
(-2.2)
P 		824.4
(-1.1)
P 		371.8
(-3)
P 		1461
B 2158
(3)
P 		1744.5
(1.4)
P 		1166.4
(-0.8)
P 		717.6
(-2.5)
P 		1063.3
(-1.2)
P 		586.9
(-3)
P 		1571
C 2504.3
(3)
P 		1398.6
(-0.2)
P 		915.7
(-1.6)
P 		454.9
(-2.9)
P 		867.4
(-1.7)
P 		414.2
(-3)
P 		2090
avr 1897.5
(3) 		1658.7
(2) 		997.8
(-0.7) 		578.9
(-2.5) 		918.4
(-1.1) 		457.6
(-3) 		1440
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171997_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19645
Sequence Type Exemplar sequence
Representative Public ID 871838 NCBI
Target Description g871838 /REP_DB=GenBank Identifier /GB=D38542.1 /PROTEIN_GB=BAA07545.1 /CHR=1 /FEA=Mapped Transcript /DEF=CeTMIII
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026528 NCBI Caenorhabditis elegans LEVamisole resistant family member (lev-11) (lev-11) mRNA, complete cds. 11/11 None
Y105E8B.1e.2 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633555:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1e.3 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633553:-1 gene:Y105E8B.1 11/11 A 
Y105E8B.1e.1 ENSEMBL cdna:known chromosome:CEL140:I:14629059:14633555:-1 gene:Y105E8B.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026524 6/11 Cross Hyb Matching Probes None
NM_001026529 6/11 Cross Hyb Matching Probes None
NM_001026526 6/11 Cross Hyb Matching Probes None
NM_001026525 6/11 Cross Hyb Matching Probes None
NM_001026527 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011752 3/11 Cross Hyb Matching Probes None
SNAP00000011730 1/11 Cross Hyb Matching Probes None
Y105E8B.1a.1 6/11 Cross Hyb Matching Probes A B 
Y105E8B.1a.2 6/11 Cross Hyb Matching Probes A B 
Y105E8B.1f 6/11 Cross Hyb Matching Probes A 
Y105E8B.1c 6/11 Cross Hyb Matching Probes A 
Y105E8B.1b.2 6/11 Cross Hyb Matching Probes A B 
Y105E8B.1b.3 2/11 Cross Hyb Matching Probes B 
Y105E8B.1b.1 2/11 Cross Hyb Matching Probes None
Y105E8B.1b.4 2/11 Cross Hyb Matching Probes None
Y105E8B.1d 2/11 Cross Hyb Matching Probes B 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173319 6 1 NM_001026524 172001_x_at (11), 194257_x_at (11)
NM_001026525 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026526 172001_x_at (11), 175734_s_at (11), 194257_x_at (11)
NM_001026528 171997_x_at (11), 172001_x_at (11), 175734_s_at (11), 176396_s_at (11), 194257_x_at (11)
NM_001026529 172001_x_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14629222-14633484(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y105E8B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45604 Hypothetical protein Y105E8B.1e [Caenorhabditis elegans] ref|NP_001021699.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] dbj|BAA07542.1| CeTMIII [Caenorhabditis elegans] sp|Q27249|TPM3_CAEEL Tropomyosin isoform 3 dbj|BAA07545.1| CeTMIII [Caenorhabditis elegans] 6.0E-78
blast CAE72603 Hypothetical protein CBG19793 [Caenorhabditis briggsae] 2.0E-77
blast CAC70115 Hypothetical protein Y105E8B.1c [Caenorhabditis elegans] ref|NP_001021697.1| LEVamisole resistant family member (lev-11) [Caenorhabditis elegans] gb|AAG10302.1| tropomyosin isoform IV [Caenorhabditis elegans] 5.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR000533 EMBL-EBI Tropomyosin 1.6E-121
Sequence
Target Sequence 
>C. ELEGANS:171997_X_AT
tgaaggaggctgagacccgtgccgaattcgctgagcgttccgtccagaagctccagaagg
aggtcgacagactcgaagatgaactcctcctcgagaaggagcgtgtccgaaacttgactg
aagaaatcgaacagaccgtccaggagatccaaggatcctaaataacgaattggtgcacga
gaaggaacgctacaagaccatctccgaagaactcgattccaccttccaagagctctccgg
atattaaacatccatgtcctatcgcgttccttttttccccccgcctacttgtattttcgt
cacaacatcttatcccccccacccaaaaacctttgaaaccatcaaaaccactcaaacttt
cctattttctttacttttttaaatactttttataaaagcttcacattatcaactgttttt
ctctgtgtattcatccccacccctcccatccaaaaaccaagaattctcttttagcagatg
agaagcttcaattgttcttttttctttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGGAGGCTGAGACCCGTGCCGA 189 575 624 Antisense
TGCCGAATTCGCTGAGCGTTCCGTC 589 585 643 Antisense
GACAGACTCGAAGATGAACTCCTCC 253 367 689 Antisense
GAACTCCTCCTCGAGAAGGAGCGTG 271 349 704 Antisense
GGAGCGTGTCCGAAACTTGACTGAA 455 521 721 Antisense
GAAGAAATCGAACAGACCGTCCAGG 387 335 743 Antisense
GACCGTCCAGGAGATCCAAGGATCC 664 381 757 Antisense
ACCTTCCAAGAGCTCTCCGGATATT 315 71 844 Antisense
TATTTTCGTCACAACATCTTATCCC 39 663 915 Antisense
CTGTTTTTCTCTGTGTATTCATCCC 216 239 1036 Antisense
GCTTCAATTGTTCTTTTTTCTTTCT 408 303 1108 Antisense
Sequence Source GenBank