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[171996_x_at]

Description g1079711 /REP_DB=GenBank Identifier /GB=U39761.1 /PROTEIN_GB=AAC46934.1 /CHR=X /FEA=Mapped Transcript /DEF=EGL-15
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 11      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 70      6grp_total > 13      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 50      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 383
1 2 3 4 range
A 527.8
(3)
P 		286.5
(-0.9)
P 		200.6
(-2.3)
P 		155
(-3)
P 		373
B 502.4
(3)
P 		238.1
(-2.1)
P 		238
(-2.1)
P 		188.5
(-3)
P 		314
C 538.2
(3)
P 		213.7
(-2.4)
P 		252.4
(-1.7)
P 		174.8
(-3)
P 		363
avr 522.8
(3) 		246.1
(-1.7) 		230.3
(-2) 		172.8
(-3) 		350

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 371.4
(1.8)
P 		427.7
(3)
P 		242.7
(-0.8)
P 		314.8
(0.7)
P 		219.5
(-1.3)
P 		137.1
(-3)
P 		291
B 392.5
(3)
P 		307.6
(0.8)
P 		323
(1.2)
P 		355.4
(2)
P 		239.6
(-1)
P 		165.7
(-3)
P 		227
C 383.6
(3)
P 		305.2
(0.9)
P 		333.4
(1.6)
P 		289.1
(0.4)
P 		285.3
(0.3)
P 		162.1
(-3)
P 		222
avr 382.5
(3) 		346.8
(2.1) 		299.7
(0.8) 		319.8
(1.3) 		248.1
(-0.5) 		155
(-3) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 192.2
(3)
P 		62.2
(-1.6)
P 		52.4
(-1.9)
P 		22.7
(-3)
P 		170
B 160.2
(3)
P 		58.8
(-2.1)
P 		55.2
(-2.3)
P 		40.2
(-3)
P 		120
C 178.2
(3)
P 		61.4
(-1.7)
P 		88
(-0.6)
P 		29.5
(-3)
P 		149
avr 176.9
(3) 		60.8
(-1.8) 		65.2
(-1.6) 		30.8
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 68.5
(-1.2)
P 		152.1
(3)
P 		52.9
(-2)
P 		79.8
(-0.7)
P 		66.2
(-1.3)
P 		33.4
(-3)
P 		119
B 136.6
(3)
P 		102.4
(0.3)
P 		78.4
(-1.7)
P 		94.1
(-0.4)
P 		97.3
(-0.2)
P 		61.8
(-3)
P 		75
C 142.2
(3)
P 		93.1
(-0.4)
P 		84.9
(-0.9)
P 		58.1
(-2.7)
P 		92.3
(-0.4)
P 		54.3
(-3)
P 		88
avr 115.8
(3) 		115.9
(3) 		72.1
(-1) 		77.3
(-0.5) 		85.3
(0.2) 		49.8
(-3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171996_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19954
Sequence Type Exemplar sequence
Representative Public ID 1079711 NCBI
Target Description g1079711 /REP_DB=GenBank Identifier /GB=U39761.1 /PROTEIN_GB=AAC46934.1 /CHR=X /FEA=Mapped Transcript /DEF=EGL-15
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077441(11), NM_001029552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077441 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-15) (egl-15) mRNA, complete cds. 11/11 A 
NM_001029552 NCBI Caenorhabditis elegans EGg Laying defective family member (egl-15) (egl-15) mRNA, complete cds. 11/11 None
F58A3.2a ENSEMBL cdna:known chromosome:CEL140:X:11016354:11023330:1 gene:F58A3.2 11/11 A 
F58A3.2b.2 ENSEMBL cdna:known chromosome:CEL140:X:11016363:11023317:1 gene:F58A3.2 11/11 A 
F58A3.2b.1 ENSEMBL cdna:known chromosome:CEL140:X:11016363:11023311:1 gene:F58A3.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029554 6/11 Cross Hyb Matching Probes None
NM_001029553 2/11 Cross Hyb Matching Probes None
NM_001029555 3/11 Cross Hyb Matching Probes None
AY292532 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000041424 3/11 Cross Hyb Matching Probes None
SNAP00000041418 2/11 Cross Hyb Matching Probes None
F58A3.2d 7/11 Cross Hyb Matching Probes A 
F58A3.2b.3 8/11 Cross Hyb Matching Probes A 
F58A3.2e 3/11 Cross Hyb Matching Probes A 
F58A3.2c 2/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181291 5 2 NM_001029552 171996_x_at (11)
NM_077441 171996_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11016353-11023330(+) 100.0 100.0
Public Domain and Genome References
Ensembl F58A3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02673 Hypothetical protein F58A3.2a [Caenorhabditis elegans] ref|NP_509842.2| EGg Laying defective family member (egl-15) [Caenorhabditis elegans] sp|Q10656|EGL15_CAEEL Myoblast growth factor receptor egl-15 precursor (Egg laying defective protein 15) gb|AAC46934.1| EGL-15 prf||2201334A egl-15 gene 0.0
blast CAE47468 Hypothetical protein F58A3.2e [Caenorhabditis elegans] ref|NP_001024726.1| EGg Laying defective family member (egl-15) [Caenorhabditis elegans] 0.0
blast CAD44136 Hypothetical protein F58A3.2d [Caenorhabditis elegans] ref|NP_001024725.1| EGg Laying defective family member (egl-15) [Caenorhabditis elegans] 0.0
blast CAC70094 Hypothetical protein F58A3.2b [Caenorhabditis elegans] ref|NP_001024723.1| EGg Laying defective family member (egl-15) [Caenorhabditis elegans] 0.0
blast AAP44084 EGL-15 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-77
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.9E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-5
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-77
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509842.2 2 491-513,526-548
NP_001024723.1 2 439-461,474-496
F58A3.2a 2 491-513,526-548
F58A3.2b.2 2 439-461,474-496
F58A3.2b.1 2 439-461,474-496
Sequence
Target Sequence 
>C. ELEGANS:171996_X_AT
cacattattacaccggaaacctctcaacgtattccatcaaacaacaatagcatgagcaaa
cccgaattttgaccgtttttagtgtacatccacaaagtgctcaacgaaccaatcggaaac
ggatcaaactcaccagtattataatacaacgtctaaaattcaatatcttcattttacctt
cgatgatccagattgtatgactagatcaagagattctgcaatattcgaggaatcatatca
tcctaactatatccagtcacatccactctactcgaaaatcataatcaaaaagaacatgac
gcctcgcaacccgttgccgacaaaggaaactattgtctaacttcgtttttgactactttt
ttcgtcctcttttctttgtttgctgcttgctatgatctagtcatttttgaccagatttct
gctttacttttccttctccacacttatgctcagttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACATTATTACACCGGAAACCTCTC 223 197 3073 Antisense
AAACCTCTCAACGTATTCCATCAAA 649 125 3089 Antisense
AATAGCATGAGCAAACCCGAATTTT 6 173 3118 Antisense
TTGACCGTTTTTAGTGTACATCCAC 57 705 3141 Antisense
GTGTACATCCACAAAGTGCTCAACG 41 487 3154 Antisense
AGTGCTCAACGAACCAATCGGAAAC 651 59 3168 Antisense
TCGGAAACGGATCAAACTCACCAGT 402 605 3185 Antisense
TCACATCCACTCTACTCGAAAATCA 575 627 3329 Antisense
CTTTTCTTTGTTTGCTGCTTGCTAT 172 223 3441 Antisense
GACCAGATTTCTGCTTTACTTTTCC 691 381 3481 Antisense
TTCTCCACACTTATGCTCAGTTTTC 637 693 3506 Antisense
Sequence Source GenBank