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[171993_x_at]

Description AV180036_rc /REP_DB=TREMBL Accession /GB=AV180036 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk601h10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 50      6grp_total > 07      4grp_total > 45      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 820
1 2 3 4 range
A 1086.6
(3)
P 		816.3
(0.8)
P 		339.1
(-3)
P 		493
(-1.8)
P 		748
B 1045.2
(3)
P 		757.4
(0.3)
P 		413.5
(-3)
P 		611.5
(-1.1)
P 		632
C 1158.9
(3)
P 		734.7
(-0.3)
P 		389.1
(-3)
P 		437.4
(-2.6)
P 		770
avr 1096.9
(3) 		769.5
(0.3) 		380.6
(-3) 		514
(-1.9) 		716

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 551
1 2 3 4 5 6 range
A 812.6
(3)
P 		420.6
(-1.3)
P 		352.1
(-2.1)
P 		271.7
(-3)
P 		339.9
(-2.2)
P 		274.5
(-3)
P 		541
B 778.8
(3)
P 		456.1
(-0.7)
P 		456.1
(-0.7)
P 		372.5
(-1.7)
P 		261.3
(-3)
P 		360.3
(-1.9)
P 		518
C 775.6
(3)
P 		418.2
(-1.4)
P 		405.7
(-1.5)
P 		388.7
(-1.7)
P 		342.9
(-2.3)
P 		283.8
(-3)
P 		492
avr 789
(3) 		431.6
(-1.4) 		404.6
(-1.8) 		344.3
(-2.5) 		314.7
(-2.9) 		306.2
(-3) 		483
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 323
1 2 3 4 range
A 395.6
(3)
P 		177.2
(-1.1)
P 		88.6
(-2.7)
P 		72.2
(-3)
P 		323
B 333.3
(3)
P 		187.1
(-0.7)
P 		95.8
(-3)
P 		130.3
(-2.1)
P 		238
C 383.6
(3)
P 		211.2
(-0.3)
P 		135.6
(-1.8)
P 		73.8
(-3)
P 		310
avr 370.8
(3) 		191.8
(-0.9) 		106.7
(-2.7) 		92.1
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 149.8
(3)
P 		149.6
(3)
P 		76.7
(-2.3)
P 		68.9
(-2.8)
P 		102.6
(-0.4)
P 		66.8
(-3)
P 		83
B 271
(3)
P 		151.8
(-1.2)
P 		110.7
(-2.6)
P 		98.7
(-3)
P 		106.2
(-2.7)
P 		134.3
(-1.8)
P 		172
C 287.5
(3)
P 		127.6
(-1.6)
P 		103.2
(-2.3)
P 		78.2
(-3)
P 		110.9
(-2.1)
P 		95
(-2.5)
P 		209
avr 236.1
(3) 		143
(-0.6) 		96.9
(-2.4) 		81.9
(-3) 		106.6
(-2) 		98.7
(-2.3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171993_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27899
Sequence Type Exemplar sequence
Representative Public ID AV180036 NCBI
Target Description AV180036_rc /REP_DB=TREMBL Accession /GB=AV180036 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk601h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064540
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W01G7.1 ENSEMBL cdna:known chromosome:CEL140:II:14033108:14037613:-1 gene:W01G7.1 None
NM_064540 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-5) (daf-5) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14033180-14033448(-) 88.41 88.41
Public Domain and Genome References
Gene Title
Gene Symbol daf-5
Ensembl W01G7.1
Entrez Gene 175054 Entrez gene
SwissProt Q9XVH7 EMBL-EBI
WormBase CE18985 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03453 Hypothetical protein W01G7.1 [Caenorhabditis elegans] ref|NP_496941.1| abnormal DAuer Formation family member (daf-5) [Caenorhabditis elegans] gb|AAR00670.1| abnormal DAuer Formation DAF-5, a Ski oncogene homolog involved in a neuronal TGF beta pathway (71.0 kD) (daf-5) [Caenorhabditis elegans] 0.0
blast CAE73392 Hypothetical protein CBG20832 [Caenorhabditis briggsae] 9.0E-87
Sequence
Target Sequence 
>C. ELEGANS:171993_X_AT
tatgtggtaaacacagtcttctccacaacaaaatacgcactttaanaaatcnatgtatct
ctaccaaatgctgctactcganaacntgtacanatttctaataatcttttcggntcgana
ttcctcnnnnnaataatcacntcnnnnnnnntnnnnnnnnnnnnnnnnnnnnnnnctgcc
cggttcaatatgtattttgtcattcttgagta

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTGGTAAACACAGTCTTCTCCA 648 655 17 Antisense
TGGTAAACACAGTCTTCTCCACAAC 13 553 21 Antisense
CACAGTCTTCTCCACAACAAAATAC 101 197 28 Antisense
GTCTTCTCCACAACAAAATACGCAC 511 467 32 Antisense
CTTCTCCACAACAAAATACGCACTT 235 221 34 Antisense
CTCCACAACAAAATACGCACTTTAA 619 235 37 Antisense
ATGTATCTCTACCAAATGCTGCTAC 81 49 69 Antisense
GTATCTCTACCAAATGCTGCTACTC 699 453 71 Antisense
ATCTCTACCAAATGCTGCTACTCGA 416 31 73 Antisense
CTGCCCGGTTCAATATGTATTTTGT 134 237 192 Antisense
ATATGTATTTTGTCATTCTTGAGTA 701 19 204 Antisense
Sequence Source Affymetrix Proprietary Database