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[171991_x_at]

Description AV199709_rc /REP_DB=TREMBL Accession /GB=AV199709 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk550e12 : 3prime end, single read.
Cluster 6grp_total > 85      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 65.7
(3)
A 		15.4
(-2.7)
A 		64.8
(2.9)
A 		12.3
(-3)
A 		53
B 40.5
(-0.5)
A 		27
(-1.7)
A 		10.8
(-3)
A 		83.5
(3)
A 		73
C 30.3
(0.1)
A 		19.4
(-3)
A 		40.6
(3)
A 		29.2
(-0.2)
A 		21
avr 45.5
(3) 		20.6
(-3) 		38.7
(1.4) 		41.7
(2.1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 15
(-3)
A 		72.5
(1.2)
A 		26.6
(-2.1)
A 		96.8
(3)
P 		48.3
(-0.6)
A 		41.9
(-1)
A 		82
B 69.7
(-1.5)
A 		62.9
(-2.1)
A 		52.9
(-3)
A 		74.9
(-1)
A 		109.9
(2.3)
A 		118
(3)
P 		65
C 18
(-3)
A 		82.5
(1.7)
A 		27.9
(-2.3)
A 		66.2
(0.5)
A 		41.8
(-1.3)
A 		99.7
(3)
P 		82
avr 34.2
(-3) 		72.6
(1.4) 		35.8
(-2.8) 		79.3
(2.2) 		66.7
(0.7) 		86.5
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.9
(3)
A 		3.4
(-2.6)
A 		16.9
(1.1)
A 		1.8
(-3)
A 		22
B 12.9
(1.1)
A 		6.7
(-1.4)
A 		2.5
(-3)
A 		17.8
(3)
A 		15
C 10
(0.3)
A 		5.6
(-2.5)
A 		14.2
(3)
A 		4.9
(-3)
A 		9
avr 15.6
(3) 		5.2
(-3) 		11.2
(0.5) 		8.2
(-1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 2.8
(-3)
A 		25.8
(3)
A 		5.8
(-2.2)
A 		24.6
(2.7)
P 		14.6
(0.1)
A 		10.2
(-1.1)
A 		23
B 24.2
(-0.9)
A 		20.9
(-1.5)
A 		12.9
(-3)
A 		19.8
(-1.7)
A 		44.7
(3)
A 		44
(2.9)
P 		32
C 6.7
(-3)
A 		25.2
(1.2)
A 		7.1
(-2.9)
A 		13.3
(-1.5)
A 		13.5
(-1.5)
A 		33.4
(3)
P 		27
avr 11.2
(-2.2) 		24
(1.5) 		8.6
(-3) 		19.2
(0.1) 		24.3
(1.6) 		29.2
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171991_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27799
Sequence Type Exemplar sequence
Representative Public ID AV199709 NCBI
Target Description AV199709_rc /REP_DB=TREMBL Accession /GB=AV199709 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk550e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065056, NM_065055
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39A3CL.4b ENSEMBL cdna:known chromosome:CEL140:III:1772635:1778058:-1 gene:Y39A3CL.4 A 
NM_065055 NCBI Caenorhabditis elegans Y39A3CL.4a (Y39A3CL.4) mRNA, complete cds. A 
GENEFINDER00000009095 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1772635:1777406:-1 None
NM_065056 NCBI Caenorhabditis elegans Y39A3CL.4b (Y39A3CL.4) mRNA, complete cds. A 
Y39A3CL.4a ENSEMBL cdna:known chromosome:CEL140:III:1772556:1777597:-1 gene:Y39A3CL.4 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1772571-1774040(-) 97.03 97.03
Public Domain and Genome References
Ensembl Y39A3CL.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68886 Hypothetical protein Y39A3CL.4b [Caenorhabditis elegans] ref|NP_497457.1| Y39A3CL.4b [Caenorhabditis elegans] 0.0
blast AAK68885 Hypothetical protein Y39A3CL.4a [Caenorhabditis elegans] ref|NP_497456.2| Y39A3CL.4a [Caenorhabditis elegans] 0.0
blast AAK68886 Hypothetical protein Y39A3CL.4b [Caenorhabditis elegans] ref|NP_497457.1| Y39A3CL.4b [Caenorhabditis elegans] 1.0E-172
blast AAK68885 Hypothetical protein Y39A3CL.4a [Caenorhabditis elegans] ref|NP_497456.2| Y39A3CL.4a [Caenorhabditis elegans] 1.0E-172
Sequence
Target Sequence 
>C. ELEGANS:171991_X_AT
ttggcagaagcagcagactggaaagcacaagcgggttccactgcccggaaattggggnga
taacccggacaaacnnnnnnnggaaatggccggattccaattttngacagaacgtgctca
aatggagatgggatcggnnnnncgagatgntcaggcggcctaagtggaagcagccaccgc
ctccgagaattttgagaagtaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCAGAAGCAGCAGACTGGAAAG 444 709 51 Antisense
GCAGCAGACTGGAAAGCACAAGCGG 339 313 60 Antisense
GCAGACTGGAAAGCACAAGCGGGTT 258 309 63 Antisense
GGAAAGCACAAGCGGGTTCCACTGC 584 525 70 Antisense
GACAGAACGTGCTCAAATGGAGATG 100 367 156 Antisense
CGTGCTCAAATGGAGATGGGATCGG 567 245 163 Antisense
TCAGGCGGCCTAAGTGGAAGCAGCC 628 613 201 Antisense
GGCGGCCTAAGTGGAAGCAGCCACC 307 541 204 Antisense
GGCCTAAGTGGAAGCAGCCACCGCC 653 535 207 Antisense
CCACCGCCTCCGAGAATTTTGAGAA 557 271 224 Antisense
CGCCTCCGAGAATTTTGAGAAGTAA 622 257 228 Antisense
Sequence Source Affymetrix Proprietary Database