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[171987_x_at]

Description AV176910_rc /REP_DB=TREMBL Accession /GB=AV176910 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk520d3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 62      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 57      6grp_total > 53      4grp_total > 40      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1296
1 2 3 4 range
A 3011.5
(-3)
P 		3206.2
(-2)
P 		4188.5
(3)
P 		3524.9
(-0.4)
P 		1177
B 2944.1
(-3)
P 		3611.2
(1.6)
P 		3812
(3)
P 		3368
(-0.1)
P 		868
C 2892.2
(-3)
P 		3611.8
(3)
P 		3494.7
(2)
P 		3234.4
(-0.1)
P 		720
avr 2949.3
(-3) 		3476.4
(0.6) 		3831.7
(3) 		3375.8
(-0.1) 		882

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1268
1 2 3 4 5 6 range
A 2133.4
(-3)
P 		2367.3
(-0.8)
P 		2530.7
(0.8)
P 		2328.7
(-1.1)
P 		2566.6
(1.1)
P 		2760.2
(3)
P 		627
B 2504.6
(1.4)
P 		2117.5
(-3)
P 		2646.5
(3)
P 		2426.5
(0.5)
P 		2277.2
(-1.2)
P 		2524.9
(1.6)
P 		529
C 2634.9
(2)
P 		1923.7
(-1.4)
P 		2806.3
(2.8)
P 		2013.5
(-1)
P 		2852.9
(3)
P 		1585
(-3)
P 		1268
avr 2424.3
(0.3) 		2136.2
(-3) 		2661.2
(3) 		2256.2
(-1.6) 		2565.6
(1.9) 		2290
(-1.2) 		525
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 702
1 2 3 4 range
A 1096.5
(3)
P 		696
(-1.1)
P 		1095
(3)
P 		516
(-3)
P 		581
B 938.9
(3)
P 		891.9
(1.7)
P 		883.3
(1.5)
P 		717.7
(-3)
P 		221
C 957.4
(0.7)
P 		1038.4
(1.4)
P 		1218
(3)
P 		545.4
(-3)
P 		673
avr 997.6
(2.1) 		875.4
(0.6) 		1065.4
(3) 		593
(-3) 		472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 583
1 2 3 4 5 6 range
A 393.3
(-3)
P 		841.9
(3)
P 		551.1
(-0.9)
P 		590.6
(-0.4)
P 		774.5
(2.1)
P 		672
(0.7)
P 		449
B 871.5
(1.6)
P 		704.8
(-1.8)
P 		642.6
(-3)
P 		642.7
(-3)
P 		925.2
(2.7)
P 		941.5
(3)
P 		299
C 976.6
(3)
P 		587
(-1.1)
P 		714.2
(0.2)
P 		404.9
(-3)
P 		923.2
(2.4)
P 		530.6
(-1.7)
P 		572
avr 747.1
(0.7) 		711.2
(0) 		636
(-1.4) 		546.1
(-3) 		874.3
(3) 		714.7
(0.1) 		328
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171987_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27969
Sequence Type Exemplar sequence
Representative Public ID AV176910 NCBI
Target Description AV176910_rc /REP_DB=TREMBL Accession /GB=AV176910 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk520d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061361(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061361 NCBI Caenorhabditis elegans W08F4.3 (W08F4.3) mRNA, complete cds. 10/11 A 
W08F4.3.2 ENSEMBL cdna:known chromosome:CEL140:II:580598:581947:1 gene:W08F4.3 10/11 None
W08F4.3.1 ENSEMBL cdna:known chromosome:CEL140:II:580600:581999:1 gene:W08F4.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029466 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029472 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:581220-581950(+) 90.13 90.13
Public Domain and Genome References
Gene Title
Ensembl W08F4.3
Entrez Gene 173450 Entrez gene
SwissProt O02109 EMBL-EBI
WormBase CE14716 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6696 ergosterol biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5783 endoplasmic reticulum inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
247 C-8 sterol isomerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71167 Hypothetical protein W08F4.3 [Caenorhabditis elegans] ref|NP_493762.1| W08F4.3 [Caenorhabditis elegans] 1.0E-120
blast CAE62900 Hypothetical protein CBG07090 [Caenorhabditis briggsae] 6.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR006716 EMBL-EBI ERG2 and sigma1 receptor-like protein 4.0E-113
Sequence
Target Sequence 
>C. ELEGANS:171987_X_AT
ccacgtcacttctggaatctcactcggcgagccactttcggtcattcaattntacatgaa
gcaggcctacaactactggaacaacctgagccacaccctctatcgtgtcttccagcacta
caaggcccgcgccactggagaactttaaataatttatgtgattccccatccggtgcattt
ctacaagcattctaacccgaaattttcatttattcagtcatgttttatcccaat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGTCACTTCTGGAATCTCACTC 257 275 63 Antisense
TACATGAAGCAGGCCTACAACTACT 687 641 115 Antisense
GGCCTACAACTACTGGAACAACCTG 251 543 126 Antisense
CTACTGGAACAACCTGAGCCACACC 652 223 135 Antisense
CCCGCGCCACTGGAGAACTTTAAAT 63 257 188 Antisense
ATAATTTATGTGATTCCCCATCCGG 439 25 211 Antisense
CCCATCCGGTGCATTTCTACAAGCA 451 259 227 Antisense
GCATTTCTACAAGCATTCTAACCCG 510 307 237 Antisense
AGCATTCTAACCCGAAATTTTCATT 89 79 248 Antisense
GAAATTTTCATTTATTCAGTCATGT 297 363 261 Antisense
TTATTCAGTCATGTTTTATCCCAAT 467 679 272 Antisense
Sequence Source Affymetrix Proprietary Database