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[171986_x_at]

Description AU113035_rc /REP_DB=TREMBL Accession /GB=AU113035 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk701h6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 96      6grp_total > 76      4grp_total > 33      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 801
1 2 3 4 range
A 1128.8
(-3)
P 		1787.5
(3)
P 		1306.4
(-1.4)
P 		1297.8
(-1.5)
P 		659
B 1065.3
(-3)
P 		1389.8
(2.9)
P 		1393.6
(3)
P 		1362.1
(2.4)
P 		328
C 1096.7
(-3)
P 		1412.2
(-0.5)
P 		1490.8
(0.1)
P 		1865.9
(3)
P 		769
avr 1096.9
(-3) 		1529.8
(3) 		1396.9
(1.2) 		1508.6
(2.7) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1096
1 2 3 4 5 6 range
A 534.5
(-3)
P 		536
(-3)
P 		1055.7
(2.5)
P 		922.5
(1.1)
P 		549.5
(-2.8)
P 		1100.1
(3)
P 		566
B 499.3
(-3)
P 		692.9
(-1.9)
P 		877.8
(-0.8)
P 		556.3
(-2.7)
P 		965.8
(-0.3)
P 		1523.6
(3)
P 		1024
C 571.2
(-2.8)
P 		596
(-2.7)
P 		539.2
(-3)
P 		702
(-2.1)
P 		826
(-1.4)
P 		1595.2
(3)
P 		1056
avr 535
(-3) 		608.3
(-2.5) 		824.2
(-1) 		726.9
(-1.7) 		780.4
(-1.3) 		1406.3
(3) 		871
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 411
(3)
P 		388
(2.4)
P 		341.5
(1.1)
P 		190
(-3)
P 		221
B 339.7
(2.6)
P 		343.2
(3)
P 		322.9
(0.7)
P 		290.3
(-3)
P 		53
C 363
(-1.6)
P 		406
(-0.3)
P 		519.6
(3)
P 		314.6
(-3)
P 		205
avr 371.2
(1.9) 		379.1
(2.3) 		394.7
(3) 		265
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 98.5
(-3)
P 		190.6
(0.3)
P 		229.9
(1.7)
P 		234
(1.8)
P 		165.8
(-0.6)
P 		267.8
(3)
P 		169
B 173.7
(-2.6)
P 		230.6
(-1.8)
P 		213.2
(-2.1)
P 		147.4
(-3)
P 		392.4
(0.5)
P 		568.1
(3)
P 		421
C 211.7
(-1.9)
P 		181.9
(-2.3)
P 		137.2
(-3)
P 		141.2
(-2.9)
P 		267.3
(-1)
P 		534
(3)
P 		397
avr 161.3
(-3) 		201
(-2.2) 		193.4
(-2.3) 		174.2
(-2.7) 		275.2
(-0.7) 		456.6
(3) 		295
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171986_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27879
Sequence Type Exemplar sequence
Representative Public ID AU113035 NCBI
Target Description AU113035_rc /REP_DB=TREMBL Accession /GB=AU113035 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk701h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072949(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072949 NCBI Caenorhabditis elegans T27E4.4 (T27E4.4) mRNA, complete cds. 9/11 A 
T27E4.4.1 ENSEMBL cdna:known chromosome:CEL140:V:9070563:9071404:1 gene:T27E4.4 9/11 A 
T27E4.4.2 ENSEMBL cdna:known chromosome:CEL140:V:9070565:9070977:1 gene:T27E4.4 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044629 8/11 Cross Hyb Matching Probes None
GENEFINDER00000044643 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9070711-9070966(+) 34.76 54.55
Public Domain and Genome References
Gene Title
Ensembl T27E4.4
Entrez Gene 179283 Entrez gene
SwissProt Q23052 EMBL-EBI
WormBase CE14253 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04835 Hypothetical protein T27E4.4 [Caenorhabditis elegans] ref|NP_505350.1| T27E4.4 [Caenorhabditis elegans] 2.0E-19
blast CAE72090 Hypothetical protein CBG19179 [Caenorhabditis briggsae] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:171986_X_AT
gttggcctactggatacggtggatatggttatggtggctgtaactgtcccacttacgccc
catgcacacatggtccaggtggatattatggttatggaggatatggcggatatggtggct
atggaggctatggtggatatggtggatatggctacaagaaataaggatcgaaatctgatc
aacttcaccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGCCTACTGGATACGGTGGATA 337 433 145 Antisense
CGGTGGATATGGTTATGGTGGCTGT 173 243 161 Antisense
TGGTGGCTGTAACTGTCCCACTTAC 468 553 176 Antisense
GCCCCATGCACACATGGTCCAGGTG 52 287 201 Antisense
GGTCCAGGTGGATATTATGGTTATG 661 501 216 Antisense
ATGGTTATGGAGGATATGGCGGATA 532 49 232 Antisense
GGCGGATATGGTGGCTATGGAGGCT 524 539 249 Antisense
GGTGGCTATGGAGGCTATGGTGGAT 240 499 258 Antisense
GGAGGCTATGGTGGATATGGTGGAT 453 515 267 Antisense
TATGGTGGATATGGCTACAAGAAAT 333 653 282 Antisense
ATCGAAATCTGATCAACTTCACCTA 601 33 311 Antisense
Sequence Source Affymetrix Proprietary Database