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[171985_x_at]

Description AV182372_rc /REP_DB=TREMBL Accession /GB=AV182372 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk636h3 : 3prime end, single read.
Cluster 6grp_total > 75      4grp_total > 22      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 4.3
(-3)
A 		4.5
(-3)
A 		11.6
(-1.9)
A 		44
(3)
A 		40
B 11.2
(-1)
A 		19.8
(3)
A 		7
(-3)
A 		7.8
(-2.6)
A 		13
C 44.2
(3)
A 		5.6
(-2.8)
A 		4.5
(-3)
A 		6.8
(-2.7)
A 		40
avr 19.9
(3) 		10
(-1.9) 		7.7
(-3) 		19.5
(2.8) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 5.2
(-2.9)
A 		4.1
(-3)
A 		5.2
(-2.9)
A 		27.3
(0.2)
A 		4.8
(-2.9)
A 		48.1
(3)
A 		44
B 11.3
(-1.2)
A 		4.4
(-2.5)
A 		5.9
(-2.2)
A 		32.8
(3)
A 		9.1
(-1.6)
A 		1.9
(-3)
A 		31
C 3.6
(-1.8)
A 		7.3
(1)
A 		2.6
(-2.5)
A 		10.1
(3)
A 		1.9
(-3)
A 		7.9
(1.4)
A 		8
avr 6.7
(-2.3) 		5.3
(-2.8) 		4.6
(-3) 		23.4
(3) 		5.3
(-2.8) 		19.3
(1.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.6
(-2.3)
A 		1
(-3)
A 		3
(-0.8)
A 		6.4
(3)
A 		5
B 3.6
(0.6)
A 		4.9
(3)
A 		1.6
(-3)
A 		1.7
(-2.8)
A 		3
C 14.6
(3)
A 		1.6
(-2.8)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		13
avr 6.6
(3) 		2.5
(-2.5) 		2.1
(-3) 		3.1
(-1.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1
(-3)
A 		1.5
(-2.7)
A 		1.1
(-2.9)
A 		6.9
(0.3)
A 		1.4
(-2.8)
A 		11.7
(3)
A 		11
B 3.9
(-0.6)
A 		1.5
(-2.4)
A 		1.4
(-2.5)
A 		8.7
(3)
A 		3.7
(-0.8)
A 		0.7
(-3)
A 		8
C 1.3
(-0.9)
A 		2.2
(1.8)
A 		0.6
(-3)
A 		2
(1.2)
A 		0.6
(-3)
A 		2.6
(3)
A 		2
avr 2.1
(-1.7) 		1.7
(-2.1) 		1
(-3) 		5.9
(3) 		1.9
(-1.9) 		5
(1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171985_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27684
Sequence Type Exemplar sequence
Representative Public ID AV182372 NCBI
Target Description AV182372_rc /REP_DB=TREMBL Accession /GB=AV182372 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk636h3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV182372
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV182372 AV182372_rc /REP_DB=TREMBL Accession /GB=AV182372 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk636h3 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065626 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000005770 1/11 Cross Hyb Matching Probes None
SNAP00000005750 1/11 Cross Hyb Matching Probes None
F26F4.4.1 1/11 Cross Hyb Matching Probes A 
F26F4.4.2 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171985_X_AT
ccctggcgtatctgttttccaatggctctttccttaaatctaatttaattttccgcccaa
atcccaacttcactcgggaatggtcaattacttccgcgtttatttggaagatctcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTGGCGTATCTGTTTTCCAATGG 197 259 21 Antisense
GCGTATCTGTTTTCCAATGGCTCTT 21 293 26 Antisense
TATCTGTTTTCCAATGGCTCTTTCC 437 659 29 Antisense
TGTTTTCCAATGGCTCTTTCCTTAA 541 559 33 Antisense
TTTCCAATGGCTCTTTCCTTAAATC 405 669 36 Antisense
CCAATGGCTCTTTCCTTAAATCTAA 698 273 39 Antisense
TGGCTCTTTCCTTAAATCTAATTTA 76 543 43 Antisense
CCAAATCCCAACTTCACTCGGGAAT 441 275 77 Antisense
TTCACTCGGGAATGGTCAATTACTT 657 685 89 Antisense
GTCAATTACTTCCGCGTTTATTTGG 390 463 103 Antisense
CCGCGTTTATTTGGAAGATCTCTTC 220 263 114 Antisense
Sequence Source Affymetrix Proprietary Database