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[171983_s_at] Cysteine proteases (2 domains)

Description AV198766_rc /REP_DB=TREMBL Accession /GB=AV198766 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk380c8 : 3prime end, single read.
Cluster 6grp_total > 19      4grp_total > 43      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.2
(-3)
A 		9.6
(3)
A 		3.5
(-1.9)
A 		3.8
(-1.7)
A 		7
B 5
(3)
A 		4.6
(2.1)
A 		2.9
(-1.7)
A 		2.3
(-3)
A 		3
C 3.4
(-2.9)
A 		8.9
(3)
A 		3.3
(-3)
A 		4.3
(-1.9)
A 		6
avr 3.5
(-2.6) 		7.7
(3) 		3.2
(-3) 		3.5
(-2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 11.1
(3)
A 		2.4
(-2.8)
A 		2.1
(-3)
A 		3.2
(-2.3)
A 		8.7
(1.4)
A 		7.7
(0.7)
A 		9
B 3.3
(-0.9)
A 		4.3
(0.5)
A 		6.1
(3)
A 		3.8
(-0.2)
A 		1.9
(-2.9)
A 		1.8
(-3)
A 		4
C 2.5
(-1.9)
A 		2.5
(-1.9)
A 		3.5
(0.8)
A 		4.3
(3)
A 		2.1
(-3)
A 		2.3
(-2.5)
A 		2
avr 5.6
(3) 		3.1
(-3) 		3.9
(-1.1) 		3.8
(-1.3) 		4.2
(-0.4) 		3.9
(-1.1) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.8
(-2.2)
A 		2.1
(3)
A 		0.9
(-1.8)
A 		0.6
(-3)
A 		2
B 1.6
(3)
A 		1.1
(0.3)
A 		0.7
(-1.9)
A 		0.5
(-3)
A 		1
C 1.1
(-1.7)
A 		2.6
(3)
A 		1.2
(-1.4)
A 		0.7
(-3)
A 		2
avr 1.2
(-0.2) 		1.9
(3) 		0.9
(-1.6) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2
(1.4)
A 		0.9
(-1.6)
A 		0.4
(-3)
A 		0.8
(-1.9)
A 		2.6
(3)
A 		1.9
(1.1)
A 		2
B 1.1
(0)
A 		1.4
(2.3)
A 		1.5
(3)
A 		1
(-0.8)
A 		0.8
(-2.3)
A 		0.7
(-3)
A 		1
C 0.9
(3)
A 		0.8
(0)
A 		0.9
(3)
A 		0.9
(3)
A 		0.7
(-3)
A 		0.8
(0)
A 		0
avr 1.3
(1.8) 		1
(-1.8) 		0.9
(-3) 		0.9
(-3) 		1.4
(3) 		1.1
(-0.6) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171983_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27620
Sequence Type Exemplar sequence
Representative Public ID AV198766 NCBI
Target Description AV198766_rc /REP_DB=TREMBL Accession /GB=AV198766 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk380c8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075226(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075226 NCBI Caenorhabditis elegans Y51A2D.8 (Y51A2D.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000034274 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18552627:18556421:-1 11/11 None
Y51A2D.8 ENSEMBL cdna:known chromosome:CEL140:V:18552605:18556421:-1 gene:Y51A2D.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18552643-18553647(-) 100.0 100.0
Public Domain and Genome References
Gene Title Cysteine proteases (2 domains)
Ensembl Y51A2D.8
Entrez Gene 180208 Entrez gene
SwissProt Q9XXQ7 EMBL-EBI
WormBase CE19204 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16407 Hypothetical protein Y51A2D.8 [Caenorhabditis elegans] ref|NP_507627.1| Y51A2D.8 [Caenorhabditis elegans] 0.0
blast CAE67436 Hypothetical protein CBG12926 [Caenorhabditis briggsae] 1.0E-152
blast CAE67436 Hypothetical protein CBG12926 [Caenorhabditis briggsae] 1.0E-148
blast CAA94738 Hypothetical protein C50F4.3 [Caenorhabditis elegans] ref|NP_505458.1| Temporarily Assigned Gene name family member (tag-329) [Caenorhabditis elegans] 5.0E-92
blast CAA94738 Hypothetical protein C50F4.3 [Caenorhabditis elegans] ref|NP_505458.1| Temporarily Assigned Gene name family member (tag-329) [Caenorhabditis elegans] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR000668 EMBL-EBI Peptidase C1A, papain 1.4E-53
Sequence
Target Sequence 
>C. ELEGANS:171983_S_AT
tgctcaccgagtggaaggtcccagtagctgtctatttcaaagtcggcgatcaattnnnnn
nnnnnnnnnnnnnnnnnntcattgaggacgattgnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacgactactgga
ttatcaagaactcctggggaggcgattgggctgagtcgggatatgttcgagtggtcaggg
gtagggattggtgctcaattgaggatcaac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCACCGAGTGGAAGGTCCCAGT 670 577 13 Antisense
CGAGTGGAAGGTCCCAGTAGCTGTC 375 249 20 Antisense
ATTATCAAGAACTCCTGGGGAGGCG 707 13 192 Antisense
AACTCCTGGGGAGGCGATTGGGCTG 84 141 201 Antisense
CCTGGGGAGGCGATTGGGCTGAGTC 558 265 205 Antisense
GGAGGCGATTGGGCTGAGTCGGGAT 568 515 210 Antisense
GATTGGGCTGAGTCGGGATATGTTC 585 435 216 Antisense
GGGATATGTTCGAGTGGTCAGGGGT 546 495 230 Antisense
GTTCGAGTGGTCAGGGGTAGGGATT 621 265 237 Antisense
GTCAGGGGTAGGGATTGGTGCTCAA 241 457 246 Antisense
GATTGGTGCTCAATTGAGGATCAAC 307 435 258 Antisense
Sequence Source Affymetrix Proprietary Database