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[171982_x_at]

Description AU115936_rc /REP_DB=TREMBL Accession /GB=AU115936 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738f4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 52      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 36      6grp_total > 62      4grp_total > 05      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9797
1 2 3 4 range
A 4719.1
(-0.2)
P 		2739.1
(-2.1)
P 		1755
(-3)
P 		8178.3
(3)
P 		6423
B 5132
(-0.4)
P 		2254.6
(-2.7)
P 		1896.1
(-3)
P 		9325.7
(3)
P 		7430
C 4368
(-1.2)
P 		2368.4
(-2.5)
P 		1482.4
(-3)
P 		11279.2
(3)
P 		9797
avr 4739.7
(-0.7) 		2454
(-2.4) 		1711.2
(-3) 		9594.4
(3) 		7883

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3414
1 2 3 4 5 6 range
A 2887.5
(-3)
P 		5760.3
(2)
P 		6301.1
(3)
P 		5646
(1.8)
P 		3716.9
(-1.5)
P 		4288.5
(-0.5)
P 		3414
B 3728.2
(-3)
P 		4721
(1.6)
P 		5020.5
(3)
P 		4819.7
(2.1)
P 		3993.1
(-1.8)
P 		4011.6
(-1.7)
P 		1292
C 3607.5
(-3)
P 		4596.3
(-0.2)
P 		5720.7
(3)
P 		5336.5
(1.9)
P 		4774.7
(0.3)
P 		4300.2
(-1)
P 		2113
avr 3407.7
(-3) 		5025.9
(1.3) 		5680.8
(3) 		5267.4
(1.9) 		4161.6
(-1) 		4200.1
(-0.9) 		2273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1548
1 2 3 4 range
A 1718.2
(3)
P 		594.6
(-2.4)
P 		458.8
(-3)
P 		1197.1
(0.5)
P 		1259
B 1636.6
(1.6)
P 		556.8
(-2.5)
P 		439.4
(-3)
P 		1987.3
(3)
P 		1548
C 1445.9
(1)
P 		680.9
(-2.3)
P 		516.7
(-3)
P 		1901.8
(3)
P 		1385
avr 1600.2
(2.5) 		610.8
(-2.3) 		471.6
(-3) 		1695.4
(3) 		1224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1516
1 2 3 4 5 6 range
A 532.3
(-3)
P 		2048.7
(3)
P 		1372.3
(0.3)
P 		1432
(0.6)
P 		1121.6
(-0.7)
P 		1044.1
(-1)
P 		1516
B 1297.2
(-1.8)
P 		1571.4
(2.2)
P 		1219.1
(-3)
P 		1276.6
(-2.1)
P 		1622.3
(3)
P 		1495.9
(1.1)
P 		403
C 1337.1
(0.4)
P 		1402.5
(1.2)
P 		1456
(1.9)
P 		1073.2
(-3)
P 		1545
(3)
P 		1439.5
(1.7)
P 		472
avr 1055.5
(-3) 		1674.2
(3) 		1349.1
(-0.2) 		1260.6
(-1) 		1429.6
(0.6) 		1326.5
(-0.4) 		619
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171982_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27712
Sequence Type Exemplar sequence
Representative Public ID AU115936 NCBI
Target Description AU115936_rc /REP_DB=TREMBL Accession /GB=AU115936 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182278, NM_069191, NM_182277
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F23B2.5a ENSEMBL cdna:known chromosome:CEL140:IV:9144686:9146096:1 gene:F23B2.5 A 
F23B2.5b ENSEMBL cdna:known chromosome:CEL140:IV:9144686:9146116:1 gene:F23B2.5 A 
GENEFINDER00000024651 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9144694:9146013:1 None
F23B2.5c ENSEMBL cdna:known chromosome:CEL140:IV:9144694:9145958:1 gene:F23B2.5 A 
NM_182277 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-1) (flp-1) mRNA, complete cds. A 
NM_069191 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-1) (flp-1) mRNA, complete cds. A 
SNAP00000024643 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9144694:9145958:1 None
NM_182278 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-1) (flp-1) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9145542-9146044(+) 74.5 74.5
Public Domain and Genome References
Ensembl F23B2.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05179 Hypothetical protein F23B2.5a [Caenorhabditis elegans] ref|NP_501592.1| FMRF-Like Peptide family member (flp-1) [Caenorhabditis elegans] gb|AAB22368.1| FMRFamide-like peptide [Caenorhabditis elegans] gb|AAC46464.1| FLP-1 [Caenorhabditis elegans] sp|P41855|FARP_CAEEL FMRFamide-like neuropeptides precursor [Contains: PNFMRY-amide; AGSDPNFLRF-amide; SQPNFLRF-amide; ASGDPNFLRF-amide; SDPNFLRF-amide (PF1); AAADPNFLRF-amide; SADPNFLRF-amide (PF2); PNFLRF-amide] 7.0E-92
blast AAA74036 CV-FLP-1B 2.0E-88
blast CAE74119 Hypothetical protein CBG21782 [Caenorhabditis briggsae] 1.0E-87
blast CAD56243 Hypothetical protein F23B2.5b [Caenorhabditis elegans] ref|NP_872077.1| FMRF-Like Peptide family member (flp-1) [Caenorhabditis elegans] 5.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0063
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0059
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.26
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0053
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.082
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0096
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0022
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0041
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0022
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.26
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0053
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.082
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0096
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0022
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0041
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.082
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0096
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0022
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 0.0041
Sequence
Target Sequence 
>C. ELEGANS:171982_X_AT
aacttcttgcgattcggaaaggctagcggagacccgaacttccttcgtttcggtcgaagt
gaccctaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnntcttgagattcggactgctcattctgacaacttcgatc
tgtgaatcccgcaagccaaatttccttcgtttcggaaaataagaaactaaaacttcgacc
gtcagcatcagatcgatcacactcacacag

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCTTGCGATTCGGAAAGGCTA 109 139 13 Antisense
GAAAGGCTAGCGGAGACCCGAACTT 163 347 29 Antisense
ATTCGGACTGCTCATTCTGACAACT 601 9 162 Antisense
CTCATTCTGACAACTTCGATCTGTG 623 229 172 Antisense
TTCTGACAACTTCGATCTGTGAATC 411 693 176 Antisense
AACTTCGATCTGTGAATCCCGCAAG 377 139 183 Antisense
CGCAAGCCAAATTTCCTTCGTTTCG 191 251 202 Antisense
GAAACTAAAACTTCGACCGTCAGCA 378 353 235 Antisense
AAACTTCGACCGTCAGCATCAGATC 140 129 242 Antisense
GACCGTCAGCATCAGATCGATCACA 193 383 249 Antisense
CATCAGATCGATCACACTCACACAG 102 213 258 Antisense
Sequence Source Affymetrix Proprietary Database