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[171981_x_at]

Description AV182659_rc /REP_DB=TREMBL Accession /GB=AV182659 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_high_8_8 > 49      6grp_highest_nonorm > 90      6grp_total > 05      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 151.8
(3)
P 		125.9
(1.5)
P 		102.7
(0.2)
P 		45.9
(-3)
P 		106
B 140.1
(3)
P 		75.7
(-1.4)
P 		68.8
(-1.9)
M 		52.4
(-3)
P 		88
C 188.1
(3)
P 		112.9
(-0.9)
P 		98.4
(-1.6)
P 		71.7
(-3)
A 		116
avr 160
(3) 		104.8
(-0.2) 		90
(-1.1) 		56.7
(-3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 166.1
(3)
P 		156.4
(2.4)
P 		71.4
(-2.7)
P 		77.5
(-2.4)
P 		154.2
(2.3)
P 		66.8
(-3)
P 		99
B 185.4
(3)
P 		185.7
(3)
P 		74.5
(-2.3)
P 		84.5
(-1.8)
P 		88.4
(-1.6)
P 		59.4
(-3)
P 		126
C 220.5
(3)
P 		101.8
(-1.7)
P 		105.1
(-1.6)
P 		116.5
(-1.1)
P 		111.4
(-1.3)
P 		69.1
(-3)
P 		151
avr 190.7
(3) 		148
(1) 		83.7
(-2.1) 		92.8
(-1.7) 		118
(-0.5) 		65.1
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 55.3
(3)
P 		27.3
(-0.5)
P 		26.8
(-0.5)
P 		6.7
(-3)
P 		49
B 44.7
(3)
P 		18.7
(-1.7)
P 		15.9
(-2.2)
M 		11.2
(-3)
P 		34
C 62.3
(3)
P 		32.5
(-0.6)
P 		34.3
(-0.3)
P 		12.1
(-3)
A 		50
avr 54.1
(3) 		26.2
(-0.8) 		25.7
(-0.9) 		10
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 30.6
(-0.7)
P 		55.6
(3)
P 		15.5
(-3)
P 		19.7
(-2.4)
P 		46.5
(1.6)
P 		16.3
(-2.9)
P 		40
B 64.5
(3)
P 		61.8
(2.7)
P 		18.1
(-3)
P 		22.4
(-2.4)
P 		35.9
(-0.7)
P 		22.2
(-2.5)
P 		46
C 81.7
(3)
P 		31.1
(-2.2)
P 		26.7
(-2.6)
P 		23.4
(-3)
P 		36.1
(-1.7)
P 		23.1
(-3)
P 		59
avr 58.9
(3) 		49.5
(1.5) 		20.1
(-3) 		21.8
(-2.7) 		39.5
(0) 		20.5
(-2.9) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171981_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27795
Sequence Type Exemplar sequence
Representative Public ID AV182659 NCBI
Target Description AV182659_rc /REP_DB=TREMBL Accession /GB=AV182659 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV182659
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV182659 AV182659_rc /REP_DB=TREMBL Accession /GB=AV182659 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk640h5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060476 7/11 Cross Hyb Matching Probes None
GENEFINDER00000030288 5/11 Cross Hyb Matching Probes None
W06H12.1.1 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11219595-11219786(+) 61.24 61.24
Sequence
Target Sequence 
>C. ELEGANS:171981_X_AT
catctaatttcacttgttcttttacatacaattcnnnnnnnnnnnnnnnnnnnnnnnnnn
ncnnnnntctctgaaaatcatcctttgcattttncacccctccccactnttntccntcat
aatttaattccccacnnnnnnaagggatccccacagtctatggctacaaaaat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCTAATTTCACTTGTTCTTTTAC 678 211 69 Antisense
ATCTAATTTCACTTGTTCTTTTACA 49 33 70 Antisense
CTAATTTCACTTGTTCTTTTACATA 333 227 72 Antisense
AATTTCACTTGTTCTTTTACATACA 382 175 74 Antisense
TCACTTGTTCTTTTACATACAATTC 464 627 78 Antisense
TCTCTGAAAATCATCCTTTGCATTT 288 611 136 Antisense
CTCTGAAAATCATCCTTTGCATTTT 688 231 137 Antisense
GATCCCCACAGTCTATGGCTACAAA 275 417 214 Antisense
ATCCCCACAGTCTATGGCTACAAAA 241 39 215 Antisense
TCCCCACAGTCTATGGCTACAAAAA 230 595 216 Antisense
CCCCACAGTCTATGGCTACAAAAAT 22 261 217 Antisense
Sequence Source Affymetrix Proprietary Database