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[171980_x_at]

Description AV198965_rc /REP_DB=TREMBL Accession /GB=AV198965 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk407b3 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 34      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 5.1
(-3)
A 		46.4
(3)
A 		6.4
(-2.8)
A 		21.8
(-0.6)
A 		41
B 4.9
(-3)
A 		19.3
(3)
A 		7.1
(-2.1)
A 		7.7
(-1.8)
A 		14
C 2.9
(-3)
A 		10.7
(-1.5)
A 		35.1
(3)
A 		22.7
(0.7)
A 		32
avr 4.3
(-3) 		25.5
(3) 		16.2
(0.4) 		17.4
(0.7) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 12.3
(-2.8)
A 		4.6
(-3)
A 		5.7
(-3)
A 		6.5
(-3)
A 		134.9
(0.1)
A 		259.7
(3)
P 		255
B 5.6
(-3)
A 		6.7
(-3)
A 		7.3
(-2.9)
A 		19
(-2.6)
A 		115.6
(0.4)
A 		198.1
(3)
P 		193
C 7.4
(-3)
A 		9.7
(-2.9)
A 		9.4
(-3)
A 		10
(-2.9)
A 		111.1
(-0.5)
A 		256.6
(3)
P 		249
avr 8.4
(-3) 		7
(-3) 		7.5
(-3) 		11.8
(-2.9) 		120.5
(-0.1) 		238.1
(3) 		231
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.8
(-2.9)
A 		10.1
(3)
A 		1.7
(-3)
A 		3.2
(-1.9)
A 		8
B 1.6
(-3)
A 		4.8
(3)
A 		1.6
(-3)
A 		1.6
(-3)
A 		3
C 1
(-3)
A 		3.1
(-1.9)
A 		12.2
(3)
A 		3.8
(-1.5)
A 		11
avr 1.5
(-3) 		6
(3) 		5.2
(1.9) 		2.9
(-1.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 2.3
(-2.9)
A 		1.6
(-3)
A 		1.2
(-3)
A 		1.7
(-3)
A 		40.7
(0.8)
A 		63.2
(3)
P 		62
B 1.9
(-3)
A 		2.2
(-3)
A 		1.8
(-3)
A 		5
(-2.7)
A 		47
(0.8)
A 		73.9
(3)
P 		72
C 2.7
(-2.9)
A 		3
(-2.9)
A 		2.4
(-3)
A 		2
(-3)
A 		36
(-0.6)
A 		85.9
(3)
P 		84
avr 2.3
(-3) 		2.3
(-3) 		1.8
(-3) 		2.9
(-2.9) 		41.2
(0.3) 		74.3
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171980_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27724
Sequence Type Exemplar sequence
Representative Public ID AV198965 NCBI
Target Description AV198965_rc /REP_DB=TREMBL Accession /GB=AV198965 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk407b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066790, NM_066791, NM_069816, NM_069817
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069817 NCBI Caenorhabditis elegans T22B3.2a (T22B3.2) mRNA, complete cds. A 
NM_069816 NCBI Caenorhabditis elegans T22B3.2b (T22B3.2) mRNA, complete cds. A 
T22B3.2a ENSEMBL cdna:known chromosome:CEL140:IV:11704335:11708207:1 gene:T22B3.2 A 
T22B3.2b ENSEMBL cdna:known chromosome:CEL140:IV:11704335:11708139:1 gene:T22B3.2 A 
ZK757.3b ENSEMBL cdna:known chromosome:CEL140:III:9887110:9891247:-1 gene:ZK757.3 A 
ZK757.3a.2 ENSEMBL cdna:known chromosome:CEL140:III:9887193:9891250:-1 gene:ZK757.3 A 
ZK757.3a.1 ENSEMBL cdna:known chromosome:CEL140:III:9887193:9891329:-1 gene:ZK757.3 A 
NM_066791 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-76) (tag-76) mRNA, complete cds. A 
NM_066790 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-76) (tag-76) mRNA, complete cds. A 
SNAP00000040609 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11706565:11708139:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040623 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9887162-9887557(-) 97.38 97.38
Public Domain and Genome References
Ensembl ZK757.3
T22B3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92969 Hypothetical protein T22B3.2a [Caenorhabditis elegans] emb|CAA92618.1| Hypothetical protein T22B3.2a [Caenorhabditis elegans] ref|NP_502218.1| T22B3.2a [Caenorhabditis elegans] 0.0
blast CAA92970 Hypothetical protein T22B3.2b [Caenorhabditis elegans] emb|CAA92619.1| Hypothetical protein T22B3.2b [Caenorhabditis elegans] ref|NP_502217.1| T22B3.2b [Caenorhabditis elegans] 0.0
blast CAB54247 Hypothetical protein ZK757.3b [Caenorhabditis elegans] emb|CAB54514.1| Hypothetical protein ZK757.3b [Caenorhabditis elegans] ref|NP_499192.1| Temporarily Assigned Gene name family member (tag-76) [Caenorhabditis elegans] 0.0
blast CAA82941 Hypothetical protein ZK757.3a [Caenorhabditis elegans] emb|CAA82389.1| Hypothetical protein ZK757.3a [Caenorhabditis elegans] ref|NP_499191.1| Temporarily Assigned Gene name family member (tag-76) [Caenorhabditis elegans] sp|P34681|YO43_CAEEL Hypothetical protein ZK757.3 in chromosome III 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.8E-54
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.8E-54
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.5E-54
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 1.5E-54
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171980_X_AT
attatgctgattggttcgcgactcgggcacgctgtcacgtcaagagaaagctcggtcttg
ccgacaacaatgattgggacaccaactcgcgctcttcaacgcttgcttcattgctcaatg
tgagaannnnnnnnnnnnnnnnnnnnnnnnngtatgctccaagtgttgatgatgaatcgt
actctctttctgatgctacttcggaccaaatccttcaagactgtgtctcggttgcaacgg
acttcaagagtcgtatgtacttca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATGCTGATTGGTTCGCGACTCG 654 11 23 Antisense
GGCACGCTGTCACGTCAAGAGAAAG 184 535 48 Antisense
GAGAAAGCTCGGTCTTGCCGACAAC 465 391 66 Antisense
AATGATTGGGACACCAACTCGCGCT 644 161 91 Antisense
AACGCTTGCTTCATTGCTCAATGTG 580 145 120 Antisense
GTATGCTCCAAGTGTTGATGATGAA 579 455 174 Antisense
GATGAATCGTACTCTCTTTCTGATG 68 413 193 Antisense
GATGCTACTTCGGACCAAATCCTTC 199 413 214 Antisense
CCAAATCCTTCAAGACTGTGTCTCG 610 275 228 Antisense
GTGTCTCGGTTGCAACGGACTTCAA 98 451 245 Antisense
GACTTCAAGAGTCGTATGTACTTCA 69 373 262 Antisense
Sequence Source Affymetrix Proprietary Database