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[171979_x_at]

Description AV183425_rc /REP_DB=TREMBL Accession /GB=AV183425 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651e2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 31      6grp_total > 97      4grp_total > 24      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 145.5
(-3)
P 		207.6
(-0.7)
P 		283.5
(2)
P 		310.6
(3)
P 		165
B 151.7
(-3)
P 		262.7
(0.2)
A 		323.8
(2)
P 		360.3
(3)
P 		209
C 145.1
(-3)
P 		256.2
(0.8)
P 		241.5
(0.3)
P 		321.5
(3)
P 		176
avr 147.4
(-3) 		242.2
(0.1) 		282.9
(1.4) 		330.8
(3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 913
1 2 3 4 5 6 range
A 153
(-3)
A 		151.2
(-3)
P 		204
(-2.6)
P 		242
(-2.4)
P 		545.6
(-0.3)
P 		1019.3
(3)
P 		868
B 155.7
(-3)
P 		157.4
(-3)
P 		206.3
(-2.7)
P 		294.2
(-2.1)
P 		624.3
(0.1)
P 		1064.5
(3)
P 		909
C 179.4
(-2.8)
P 		183.9
(-2.7)
P 		155.5
(-3)
A 		256.1
(-2)
P 		715
(2.8)
P 		739.1
(3)
P 		584
avr 162.7
(-3) 		164.2
(-3) 		188.6
(-2.8) 		264.1
(-2.2) 		628.3
(0.6) 		941
(3) 		778
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 53
(-1.4)
P 		45.1
(-3)
P 		74.1
(3)
P 		45.5
(-2.9)
P 		29
B 48.4
(-3)
P 		64.9
(0.5)
A 		75
(2.6)
P 		76.8
(3)
P 		28
C 48
(-3)
P 		73.7
(1.3)
P 		84.2
(3)
P 		54.2
(-2)
P 		36
avr 49.8
(-3) 		61.2
(-0.6) 		77.8
(3) 		58.8
(-1.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 369
1 2 3 4 5 6 range
A 28.2
(-3)
A 		53.8
(-2.3)
P 		44.4
(-2.6)
P 		61.4
(-2.1)
P 		164.7
(0.7)
P 		248.2
(3)
P 		220
B 54.2
(-2.9)
P 		52.4
(-3)
P 		50.1
(-3)
P 		77.9
(-2.5)
P 		253.6
(0.5)
P 		396.9
(3)
P 		347
C 66.5
(-2.2)
P 		56.1
(-2.5)
P 		39.6
(-3)
A 		51.5
(-2.7)
P 		231.4
(2.5)
P 		247.4
(3)
P 		208
avr 49.6
(-2.9) 		54.1
(-2.8) 		44.7
(-3) 		63.6
(-2.6) 		216.6
(1.1) 		297.5
(3) 		253
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171979_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27670
Sequence Type Exemplar sequence
Representative Public ID AV183425 NCBI
Target Description AV183425_rc /REP_DB=TREMBL Accession /GB=AV183425 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651e2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071909
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T19H12.2.2 ENSEMBL cdna:known chromosome:CEL140:V:4890243:4891238:1 gene:T19H12.2 A 
SNAP00000027981 ENSEMBL cdna:SNAP chromosome:CEL140:V:4890263:4898204:1 None
NM_071909 NCBI Caenorhabditis elegans T19H12.2 (T19H12.2) mRNA, complete cds. A 
GENEFINDER00000027987 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4890263:4891052:1 None
T19H12.2.1 ENSEMBL cdna:known chromosome:CEL140:V:4890237:4891238:1 gene:T19H12.2 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4890822-4891171(+) 77.74 77.74
Public Domain and Genome References
Gene Title
Ensembl T19H12.2
Entrez Gene 178881 Entrez gene
SwissProt O01615 EMBL-EBI
WormBase CE13754 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582674_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A cfa
CANINE_2:CFA.31.1.S1_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A cfa
DROSOPHILA_2:1636363_S_AT Mapmodulin dm
DROSGENOME1:153773_AT Mapmodulin dm
CHICKEN:GGA.13468.1.S1_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A gga
HG-U133A:201043_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133_PLUS_2:201043_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133A_2:201043_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133_PLUS_2:208571_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133A:208571_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-FOCUS:208571_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133A_2:208571_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HUGENEFL:U73477_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
U133_X3P:G6912605_3P_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
U133_X3P:G5453879_3P_A_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133_PLUS_2:201038_S_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133A_2:201038_S_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133A:201038_S_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133_PLUS_2:201051_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133A_2:201051_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-FOCUS:201051_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133A:201051_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
U133_X3P:HS.285013.0.S3_3P_A_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
U133_X3P:HS.285013.0.S2_3P_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U95AV2:37034_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U95D:74661_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133_PLUS_2:235954_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133B:235954_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133_PLUS_2:237118_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U133B:237118_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U95B:58909_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U95C:62509_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HG-U95D:83573_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
HU35KSUBC:RC_AA465160_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
U133_X3P:HS.124977.0.A1_3P_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
U133_X3P:HS.63386.0.A1_3P_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A hs
MG-U74AV2:93372_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MU11KSUBA:U73478_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MU11KSUBB:W91701_RC_S_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MG-U74AV2:104390_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOE430A:1450407_A_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOUSE430A_2:1450407_A_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOUSE430_2:1450407_A_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOE430A:1434555_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOUSE430A_2:1434555_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOUSE430_2:1434555_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOE430A:1421918_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOUSE430A_2:1421918_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOUSE430_2:1421918_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A mm
MOE430B:1442303_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A (Anp32a), mRNA mm
MOUSE430_2:1442303_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A (Anp32a), mRNA mm
MU19KSUBB:TC33526_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A (Anp32a), mRNA mm
RG-U34A:D32209_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
RAE230A:1369063_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
RAT230_2:1369063_AT acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
RAE230A:1376367_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
RAT230_2:1376367_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
RAE230B:1395398_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
RAT230_2:1395398_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
RG-U34A:RC_AA893496_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
RG-U34A:RC_AI070967_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
RG-U34A:RC_AI070967_G_AT Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A rn
Protein Similarities
Method ID Description E-Value
blast AAC69026 Udp-glucuronosyltransferase protein 9 [Caenorhabditis elegans] ref|NP_504312.1| T19H12.1 [Caenorhabditis elegans] 0.0
blast AAD14732 Udp-glucuronosyltransferase protein 8 [Caenorhabditis elegans] ref|NP_504315.1| H23N18.3 [Caenorhabditis elegans] 1.0E-176
blast NP_504313 T19H12.11 [Caenorhabditis elegans] 1.0E-172
blast AAC69027 Hypothetical protein T19H12.2 [Caenorhabditis elegans] ref|NP_504310.1| T19H12.2 [Caenorhabditis elegans] 3.0E-92
blast AAC69027 Hypothetical protein T19H12.2 [Caenorhabditis elegans] ref|NP_504310.1| T19H12.2 [Caenorhabditis elegans] 4.0E-92
blast CAB04265 Hypothetical protein F33H2.3 [Caenorhabditis elegans] ref|NP_493622.1| F33H2.3 [Caenorhabditis elegans] 2.0E-62
blast CAB04265 Hypothetical protein F33H2.3 [Caenorhabditis elegans] ref|NP_493622.1| F33H2.3 [Caenorhabditis elegans] 2.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.4E-16
Sequence
Target Sequence 
>C. ELEGANS:171979_X_AT
gggagacagcgtggagttggccccagggctcaaggctccctcaacaagagccagttctca
gatgacgagaccgacgactacgtcgttccagaagcgggagatgctgagactcgtggagcc
aagagagccgcttctgctgactgcgacgagccggaggccaagaagtcggccgagtaacaa
gggatgctccactgctccacgccacctccatcggctcaatttctcccnggagcgtgtatc
aatctctatagct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGACAGCGTGGAGTTGGCCCCA 440 495 21 Antisense
GCTCAAGGCTCCCTCAACAAGAGCC 55 303 48 Antisense
ACAAGAGCCAGTTCTCAGATGACGA 428 111 64 Antisense
TCAGATGACGAGACCGACGACTACG 406 623 78 Antisense
CGACTACGTCGTTCCAGAAGCGGGA 474 251 95 Antisense
GAAGCGGGAGATGCTGAGACTCGTG 492 343 111 Antisense
GACTCGTGGAGCCAAGAGAGCCGCT 484 373 128 Antisense
GCGACGAGCCGGAGGCCAAGAAGTC 57 289 163 Antisense
GAAGTCGGCCGAGTAACAAGGGATG 71 337 182 Antisense
AGTAACAAGGGATGCTCCACTGCTC 161 61 193 Antisense
GGAGCGTGTATCAATCTCTATAGCT 21 523 249 Antisense
Sequence Source Affymetrix Proprietary Database