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[171978_x_at]

Description AV182946_rc /REP_DB=TREMBL Accession /GB=AV182946 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk644f4 : 3prime end, single read.
Cluster 4grp_high_8_8 > 63      6grp_total > 18      4grp_total > 27      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 137.2
(-2.1)
P 		163.9
(0.7)
A 		185.4
(3)
P 		128.6
(-3)
A 		57
B 122.3
(2.7)
P 		125.9
(3)
A 		50.8
(-3)
A 		104.2
(1.3)
P 		75
C 124.1
(-2.5)
P 		119.3
(-3)
P 		141.9
(-0.8)
P 		180.6
(3)
M 		61
avr 127.9
(-2) 		136.4
(2.3) 		126
(-3) 		137.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 73.8
(0.5)
A 		83.3
(3)
P 		80.3
(2.2)
A 		60.2
(-3)
A 		75.3
(0.9)
A 		73.3
(0.4)
A 		23
B 127.6
(3)
P 		59.7
(-3)
P 		79.1
(-1.3)
A 		66.1
(-2.4)
A 		118.5
(2.2)
P 		97.2
(0.3)
P 		68
C 145
(3)
P 		85.1
(-1.1)
P 		82.4
(-1.3)
P 		85.1
(-1.1)
A 		66.5
(-2.3)
M 		56.8
(-3)
P 		88
avr 115.5
(3) 		76
(-2.3) 		80.6
(-1.7) 		70.5
(-3) 		86.8
(-0.8) 		75.8
(-2.3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 50
(3)
P 		35.6
(0.2)
A 		48.5
(2.7)
P 		18.8
(-3)
A 		31
B 39
(3)
P 		31.1
(1.3)
A 		11.8
(-3)
A 		22.2
(-0.7)
P 		27
C 41.1
(0.4)
P 		34.3
(-1.8)
P 		49.5
(3)
P 		30.4
(-3)
M 		19
avr 43.4
(3) 		33.7
(0) 		36.6
(0.9) 		23.8
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 13.6
(-3)
A 		29.6
(3)
P 		17.5
(-1.5)
A 		15.3
(-2.4)
A 		22.7
(0.4)
A 		17.8
(-1.4)
A 		16
B 44.4
(2.3)
P 		19.9
(-2.5)
P 		19.2
(-2.7)
A 		17.5
(-3)
A 		48.2
(3)
P 		36.3
(0.7)
P 		31
C 53.7
(3)
P 		26
(-1.5)
P 		21
(-2.4)
P 		17.1
(-3)
A 		21.5
(-2.3)
M 		19
(-2.7)
P 		37
avr 37.2
(3) 		25.2
(-0.5) 		19.2
(-2.2) 		16.6
(-3) 		30.8
(1.1) 		24.4
(-0.7) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171978_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28050
Sequence Type Exemplar sequence
Representative Public ID AV182946 NCBI
Target Description AV182946_rc /REP_DB=TREMBL Accession /GB=AV182946 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk644f4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y92H12BR.3 ENSEMBL cdna:known chromosome:CEL140:I:1416592:1425131:1 gene:Y92H12BR.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1424855-1425131(+) 90.4 90.4
Public Domain and Genome References
Ensembl Y92H12BR.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK09080 Hypothetical protein Y92H12BR.3a [Caenorhabditis elegans] ref|NP_490852.2| Y92H12BR.3 [Caenorhabditis elegans] 0.0
blast CAE69077 Hypothetical protein CBG15095 [Caenorhabditis briggsae] 0.0
blast CAE74532 Hypothetical protein CBG22286 [Caenorhabditis briggsae] 1.0E-170
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
Y92H12BR.3 1 600-622
Sequence
Target Sequence 
>C. ELEGANS:171978_X_AT
gatgcaaaagtagacaatttcgggcaattttagccnnnnnnnntcttatttctatgctnn
nnnttatattttcgtgagattttccaccccgttttccgcannnnnngcccattttcagcc
aaaatttctcaagcatctctcgacctccaacttcttctanatcattcccctctcgagttt
ccaaatttatttccatt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAAAAGTAGACAATTTCGGGC 567 397 49 Antisense
GCAAAAGTAGACAATTTCGGGCAAT 187 319 52 Antisense
GTAGACAATTTCGGGCAATTTTAGC 542 455 58 Antisense
TATTTTCGTGAGATTTTCCACCCCG 10 663 115 Antisense
GCCCATTTTCAGCCAAAATTTCTCA 29 287 155 Antisense
TTTCAGCCAAAATTTCTCAAGCATC 122 673 161 Antisense
CAGCCAAAATTTCTCAAGCATCTCT 185 203 164 Antisense
GCCAAAATTTCTCAAGCATCTCTCG 683 277 166 Antisense
AAAATTTCTCAAGCATCTCTCGACC 514 133 169 Antisense
TCTCGAGTTTCCAAATTTATTTCCA 170 609 219 Antisense
TCGAGTTTCCAAATTTATTTCCATT 687 601 221 Antisense
Sequence Source Affymetrix Proprietary Database