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[171973_at] Yesat transport protein WEB1 like

Description AV200676_rc /REP_DB=TREMBL Accession /GB=AV200676 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk578h5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 83      6grp_total > 99      4grp_total > 62      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 466.6
(3)
P 		385.1
(-0.7)
P 		460.1
(2.7)
P 		334.6
(-3)
P 		132
B 589.5
(3)
P 		414.8
(-0.5)
P 		499.5
(1.2)
P 		292.6
(-3)
P 		297
C 562.2
(3)
P 		410.4
(-1.1)
P 		535.2
(2.3)
P 		338.1
(-3)
P 		224
avr 539.4
(3) 		403.4
(-0.8) 		498.3
(1.9) 		321.8
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 484
1 2 3 4 5 6 range
A 324.5
(-3)
P 		441.3
(-0.8)
P 		452.8
(-0.5)
P 		350.4
(-2.5)
P 		637.4
(3)
P 		454.8
(-0.5)
P 		313
B 425.4
(-3)
P 		463.5
(-2.4)
P 		441.5
(-2.7)
P 		483.2
(-2.1)
P 		577.7
(-0.6)
P 		808.2
(3)
P 		383
C 710.7
(3)
P 		353.3
(-3)
P 		477.2
(-0.9)
P 		489.5
(-0.7)
P 		668.9
(2.3)
P 		691.2
(2.7)
P 		357
avr 486.9
(-1.3) 		419.4
(-3) 		457.2
(-2) 		441
(-2.4) 		628
(2.4) 		651.4
(3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 169.9
(3)
P 		83.6
(-1.3)
P 		120.3
(0.5)
P 		49
(-3)
P 		121
B 188
(3)
P 		102.5
(-1.1)
P 		115.7
(-0.5)
P 		62.4
(-3)
P 		126
C 186.1
(3)
P 		118
(-0.2)
P 		186.5
(3)
P 		57
(-3)
P 		130
avr 181.3
(3) 		101.4
(-0.8) 		140.8
(1.1) 		56.1
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 59.8
(-3)
P 		157
(1.4)
P 		98.6
(-1.2)
P 		88.9
(-1.7)
P 		192.3
(3)
P 		110.7
(-0.7)
P 		133
B 148
(-1.7)
P 		154.3
(-1.5)
P 		107.2
(-3)
P 		128
(-2.4)
P 		234.7
(0.9)
P 		301.4
(3)
P 		194
C 263.4
(3)
P 		107.8
(-2.7)
P 		121.5
(-2.2)
P 		98.4
(-3)
P 		216.5
(1.3)
P 		231.4
(1.8)
P 		165
avr 157.1
(-0.1) 		139.7
(-1.1) 		109.1
(-2.8) 		105.1
(-3) 		214.5
(3) 		214.5
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 171973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28047
Sequence Type Exemplar sequence
Representative Public ID AV200676 NCBI
Target Description AV200676_rc /REP_DB=TREMBL Accession /GB=AV200676 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk578h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069743(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069743 NCBI Caenorhabditis elegans T01G1.3 (T01G1.3) mRNA, complete cds. 9/11 None
T01G1.3 ENSEMBL cdna:known chromosome:CEL140:IV:11365589:11371742:-1 gene:T01G1.3 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11365661-11365909(-) 81.33 81.33
Public Domain and Genome References
Gene Title Yesat transport protein WEB1 like
Ensembl T01G1.3
Entrez Gene 178060 Entrez gene
SwissProt O45604 EMBL-EBI
WormBase CE16320 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07274 Hypothetical protein T01G1.3 [Caenorhabditis elegans] emb|CAB07223.1| Hypothetical protein T01G1.3 [Caenorhabditis elegans] ref|NP_502144.1| T01G1.3 [Caenorhabditis elegans] 0.0
blast CAE62060 Hypothetical protein CBG06078 [Caenorhabditis briggsae] 0.0
blast XP_858718 PREDICTED: similar to SEC31-like 1 isoform 2 isoform 8 [Canis familiaris] 6.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.8E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.4E-8
Sequence
Target Sequence 
>C. ELEGANS:171973_AT
attaatattatccgcgtcataatgagagtgttgccttccatgntaagngattnggattat
caattatcnnnnntgccaacattttgaatatattatatttcatttgcttcgtgtgtaaaa
tcgtgtaaactgttttgtcccaaataattattgcgtgtaatacgactttccaatannnnn
nnnnnttcctgccaatacttaaaattagatattgctttatagtcccaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAATATTATCCGCGTCATAATGA 87 13 55 Antisense
GCGTCATAATGAGAGTGTTGCCTTC 316 291 68 Antisense
CATAATGAGAGTGTTGCCTTCCATG 288 213 72 Antisense
ATATTATATTTCATTTGCTTCGTGT 455 19 144 Antisense
ATATTTCATTTGCTTCGTGTGTAAA 153 17 149 Antisense
GCTTCGTGTGTAAAATCGTGTAAAC 635 305 160 Antisense
TCGTGTAAACTGTTTTGTCCCAAAT 708 603 175 Antisense
TTGTCCCAAATAATTATTGCGTGTA 122 709 189 Antisense
TATTGCGTGTAATACGACTTTCCAA 290 665 203 Antisense
TTCCTGCCAATACTTAAAATTAGAT 253 699 240 Antisense
ATTAGATATTGCTTTATAGTCCCAA 216 13 258 Antisense
Sequence Source Affymetrix Proprietary Database