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[171971_x_at]

Description AU115528_rc /REP_DB=TREMBL Accession /GB=AU115528 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk733f9 : 3prime end, single read.
Cluster 6grp_total > 80      4grp_total > 47      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 90.1
(-0.9)
P 		121.5
(3)
A 		94.9
(-0.3)
A 		72.9
(-3)
A 		49
B 145.2
(3)
P 		43.4
(-3)
A 		111.9
(1)
A 		95.4
(0.1)
P 		102
C 171.8
(3)
M 		107.5
(-0.1)
A 		48.8
(-3)
A 		107.2
(-0.2)
A 		123
avr 135.7
(3) 		90.8
(-2.3) 		85.2
(-3) 		91.8
(-2.2) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 3.7
(-3)
A 		56.8
(3)
A 		43.6
(1.5)
A 		23
(-0.8)
A 		21.2
(-1)
A 		18.9
(-1.3)
A 		53
B 28.4
(-1.3)
A 		48.8
(0.3)
A 		34.8
(-0.8)
A 		82.4
(3)
A 		17.7
(-2.2)
A 		7.1
(-3)
A 		75
C 37.2
(0.1)
A 		28
(-0.8)
A 		4.3
(-3)
A 		36.1
(0)
A 		14.2
(-2.1)
A 		67.8
(3)
A 		64
avr 23.1
(-1.9) 		44.5
(2.5) 		27.6
(-1) 		47.2
(3) 		17.7
(-3) 		31.3
(-0.2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 32.8
(3)
P 		26.4
(1.3)
A 		24.8
(0.8)
A 		10.7
(-3)
A 		22
B 46.3
(3)
P 		10.7
(-3)
A 		25.9
(-0.4)
A 		20.3
(-1.4)
P 		36
C 56.9
(3)
M 		30.9
(-0.9)
A 		17
(-3)
A 		18.1
(-2.8)
A 		40
avr 45.3
(3) 		22.7
(-1.7) 		22.6
(-1.7) 		16.4
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 0.7
(-3)
A 		20.2
(3)
A 		9.5
(-0.3)
A 		5.8
(-1.4)
A 		6.4
(-1.2)
A 		4.6
(-1.8)
A 		20
B 9.9
(-0.7)
A 		16.2
(1.2)
A 		8.4
(-1.2)
A 		21.8
(3)
A 		7.2
(-1.6)
A 		2.7
(-3)
A 		19
C 13.8
(0.5)
A 		8.5
(-0.9)
A 		1.1
(-3)
A 		7.3
(-1.3)
A 		4.6
(-2)
A 		22.7
(3)
A 		22
avr 8.1
(-1.7) 		15
(3) 		6.3
(-2.9) 		11.6
(0.7) 		6.1
(-3) 		10
(-0.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171971_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27967
Sequence Type Exemplar sequence
Representative Public ID AU115528 NCBI
Target Description AU115528_rc /REP_DB=TREMBL Accession /GB=AU115528 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk733f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU115528
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU115528 AU115528_rc /REP_DB=TREMBL Accession /GB=AU115528 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk733f9 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060360 2/11 Cross Hyb Matching Probes A 
SNAP00000042618 2/11 Cross Hyb Matching Probes None
GENEFINDER00000042630 2/11 Cross Hyb Matching Probes None
F25H2.5.3 2/11 Cross Hyb Matching Probes A 
F25H2.5.1 2/11 Cross Hyb Matching Probes A 
F25H2.5.2 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15075156-15075352(+) 65.33 65.33
Sequence
Target Sequence 
>C. ELEGANS:171971_X_AT
acgttgactgtcactgatttctgcccagtgctctgaatgttaaatcgtagtaattcgagt
aagcgcgggtaaacggcgggagtaacnnnnnnnnnnnnnnnnnnnnnnnnngcctcgtca
tttaattgttgacgcgcatgaatggattaacgagattcctactgtccctaactactttct
agcgaaaccacaaccgcgagattgctcactggttcaagcaggaggagatcaacgactacg
ccagc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGTTGACTGTCACTGATTTCTGCC 58 95 17 Antisense
ATTTCTGCCCAGTGCTCTGAATGTT 369 17 33 Antisense
GTAGTAATTCGAGTAAGCGCGGGTA 319 455 63 Antisense
CATTTAATTGTTGACGCGCATGAAT 592 213 135 Antisense
GACGCGCATGAATGGATTAACGAGA 665 379 147 Antisense
ATTAACGAGATTCCTACTGTCCCTA 544 11 162 Antisense
CTGTCCCTAACTACTTTCTAGCGAA 223 239 178 Antisense
ACTTTCTAGCGAAACCACAACCGCG 69 103 190 Antisense
AGCGAAACCACAACCGCGAGATTGC 357 81 197 Antisense
ACCGCGAGATTGCTCACTGGTTCAA 679 87 209 Antisense
GGAGGAGATCAACGACTACGCCAGC 582 515 237 Antisense
Sequence Source Affymetrix Proprietary Database