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[171970_x_at]

Description AV198994_rc /REP_DB=TREMBL Accession /GB=AV198994 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk407g6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 51      6grp_total > 22      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 330.1
(3)
P 		196
(-0.7)
P 		123.1
(-2.7)
P 		111.8
(-3)
P 		218
B 445.5
(3)
P 		172.9
(-1.3)
P 		144.5
(-1.7)
P 		64.9
(-3)
P 		381
C 310.2
(3)
P 		159.9
(-0.8)
P 		146.9
(-1.1)
P 		73.5
(-3)
P 		237
avr 361.9
(3) 		176.3
(-1) 		138.2
(-1.8) 		83.4
(-3) 		279

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1501
1 2 3 4 5 6 range
A 612.6
(1.4)
P 		793.9
(3)
P 		649.6
(1.7)
P 		486.8
(0.3)
P 		352.4
(-0.9)
P 		115.8
(-3)
P 		678
B 737.1
(3)
P 		664.4
(2.3)
P 		702
(2.6)
P 		463
(0.2)
P 		269.1
(-1.7)
P 		139.5
(-3)
P 		598
C 621.3
(-0.9)
P 		655.6
(-0.8)
P 		723.6
(-0.5)
P 		420.3
(-1.7)
P 		1606.2
(3)
P 		105.1
(-3)
P 		1501
avr 657
(2.2) 		704.6
(2.6) 		691.7
(2.5) 		456.7
(0.2) 		742.6
(3) 		120.1
(-3) 		623
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 120.2
(3)
P 		42.5
(-1.5)
P 		32.2
(-2.1)
P 		16.4
(-3)
P 		104
B 142.1
(3)
P 		42.7
(-1.6)
P 		33.5
(-2.1)
P 		13.8
(-3)
P 		128
C 102.7
(3)
P 		46
(-0.8)
P 		51.2
(-0.4)
P 		12.4
(-3)
P 		90
avr 121.7
(3) 		43.7
(-1.4) 		39
(-1.6) 		14.2
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 112.9
(-1)
P 		282.4
(3)
P 		141.5
(-0.3)
P 		123.5
(-0.8)
P 		106.3
(-1.2)
P 		28.2
(-3)
P 		254
B 256.5
(3)
P 		221.1
(2)
P 		170.5
(0.5)
P 		122.6
(-0.9)
P 		109.3
(-1.3)
P 		52
(-3)
P 		205
C 230.3
(-0.6)
P 		200
(-1)
P 		184.2
(-1.2)
P 		84.5
(-2.4)
P 		519.7
(3)
P 		35.2
(-3)
P 		485
avr 199.9
(1.7) 		234.5
(2.7) 		165.4
(0.7) 		110.2
(-0.9) 		245.1
(3) 		38.5
(-3) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171970_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27950
Sequence Type Exemplar sequence
Representative Public ID AV198994 NCBI
Target Description AV198994_rc /REP_DB=TREMBL Accession /GB=AV198994 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk407g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028850
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000005254 ENSEMBL cdna:SNAP chromosome:CEL140:V:14110399:14112639:1 None
NM_001028850 NCBI Caenorhabditis elegans H39E23.3 (H39E23.3) mRNA, complete cds. None
GENEFINDER00000005261 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14110399:14112639:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14110529-14112673(+) 95.63 95.63
Public Domain and Genome References
Gene Title
Entrez Gene 3565355 Entrez gene
SwissProt Q564Q6 EMBL-EBI
WormBase CE38386 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582456_AT neurofilament, heavy polypeptide 200kDa cfa
CANINE_2:CFA.1268.1.S1_AT neurofilament, heavy polypeptide 200kDa cfa
CANINE_2:CFAAFFX.19019.1.S1_S_AT neurofilament, heavy polypeptide 200kDa cfa
HU35KSUBD:RC_H28150_S_AT neurofilament, heavy polypeptide 200kDa hs
HUGENEFL:X15306_RNA1_AT neurofilament, heavy polypeptide 200kDa hs
HG-U133A:204412_S_AT neurofilament, heavy polypeptide 200kDa hs
HG-U133_PLUS_2:204412_S_AT neurofilament, heavy polypeptide 200kDa hs
HG-U133A_2:204412_S_AT neurofilament, heavy polypeptide 200kDa hs
U133_X3P:G10835088_3P_S_AT neurofilament, heavy polypeptide 200kDa hs
HG-U133A_2:33767_AT neurofilament, heavy polypeptide 200kDa hs
HG-FOCUS:33767_AT neurofilament, heavy polypeptide 200kDa hs
HG-U133_PLUS_2:33767_AT neurofilament, heavy polypeptide 200kDa hs
HG-U133A:33767_AT neurofilament, heavy polypeptide 200kDa hs
HG-U95AV2:33767_AT neurofilament, heavy polypeptide 200kDa hs
MU11KSUBA:M35131_S_AT neurofilament, heavy polypeptide mm
MU11KSUBB:MSA.12733.0_F_AT neurofilament, heavy polypeptide mm
MG-U74AV2:103234_AT neurofilament, heavy polypeptide mm
MOE430A:1424847_AT neurofilament, heavy polypeptide mm
MOUSE430A_2:1424847_AT neurofilament, heavy polypeptide mm
MOUSE430_2:1424847_AT neurofilament, heavy polypeptide mm
RN-U34:X13804CDS_AT neurofilament, heavy polypeptide rn
RG-U34A:X13804CDS_AT neurofilament, heavy polypeptide rn
RN-U34:RC_AA818677_AT neurofilament, heavy polypeptide rn
RG-U34A:RC_AA818677_AT neurofilament, heavy polypeptide rn
RAE230A:1370815_AT neurofilament, heavy polypeptide rn
RAT230_2:1370815_AT neurofilament, heavy polypeptide rn
Protein Similarities
Method ID Description E-Value
blast CAI79216 Hypothetical protein H39E23.3 [Caenorhabditis elegans] ref|NP_001024021.1| H39E23.3 [Caenorhabditis elegans] 0.0
blast NP_001003352 neurofilament, heavy polypeptide 200kDa [Canis familiaris] gb|AAN40837.1| heavy neurofilament protein [Canis familiaris] 9.0E-84
blast CAE64509 Hypothetical protein CBG09244 [Caenorhabditis briggsae] 2.0E-82
Sequence
Target Sequence 
>C. ELEGANS:171970_X_AT
aagagagaatttgatccaccatagattgaatttgctgattncgagaanaatgccccancc
aagagagaagttgatnanccaaagattgaatctgctgattccgagaagaaggccccagcc
acgagagaagctgatccaccgaagactgcatctgctgattctgagaagaaggccccagtc
aagagagaagctgataagccaaagactgaatctgctgacaaggttccactaccacattaa
c

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAGAGAATTTGATCCACCATAGA 624 151 82 Antisense
TCCACCATAGATTGAATTTGCTGAT 341 587 96 Antisense
GCTGATTCCGAGAAGAAGGCCCCAG 472 295 175 Antisense
AGGCCCCAGCCACGAGAGAAGCTGA 359 41 191 Antisense
CACGAGAGAAGCTGATCCACCGAAG 506 199 201 Antisense
TCCACCGAAGACTGCATCTGCTGAT 332 589 216 Antisense
CCGAAGACTGCATCTGCTGATTCTG 144 263 220 Antisense
GATTCTGAGAAGAAGGCCCCAGTCA 263 431 238 Antisense
GAAGGCCCCAGTCAAGAGAGAAGCT 67 333 249 Antisense
GACTGAATCTGCTGACAAGGTTCCA 428 375 285 Antisense
GACAAGGTTCCACTACCACATTAAC 136 365 298 Antisense
Sequence Source Affymetrix Proprietary Database