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[171968_x_at] DNAJ-like protein

Description AV180835_rc /REP_DB=TREMBL Accession /GB=AV180835 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk612g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 14      4grp_high_8_8 > 15      6grp_highest_nonorm > 77      6grp_total > 46      4grp_total > 08      6grp_cgc > 45      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2210
1 2 3 4 range
A 974
(-3)
P 		1269.6
(-2.1)
P 		1477.9
(-1.5)
P 		3017.2
(3)
P 		2043
B 1053.7
(-3)
P 		1106.1
(-2.8)
P 		1527.1
(-1.4)
P 		2860.4
(3)
P 		1807
C 984.2
(-3)
P 		1087.4
(-2.7)
P 		1491.8
(-1.6)
P 		3184.1
(3)
P 		2200
avr 1004
(-3) 		1154.4
(-2.6) 		1498.9
(-1.5) 		3020.6
(3) 		2017

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 657
1 2 3 4 5 6 range
A 1134.7
(-1)
P 		1575.6
(3)
P 		1380.1
(1.2)
P 		1157.7
(-0.8)
P 		918.2
(-3)
P 		1325.2
(0.7)
P 		657
B 1460.8
(3)
P 		1456.5
(2.9)
P 		1187.1
(-3)
P 		1249.6
(-1.6)
P 		1243.6
(-1.8)
P 		1286.2
(-0.8)
P 		274
C 1224
(0)
P 		1480
(2.7)
P 		1220
(-0)
P 		939
(-3)
P 		1007.4
(-2.3)
P 		1504.9
(3)
P 		566
avr 1273.2
(-0.1) 		1504
(3) 		1262.4
(-0.2) 		1115.4
(-2.2) 		1056.4
(-3) 		1372.1
(1.2) 		448
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 354.6
(-0.1)
P 		275.6
(-3)
P 		386.4
(1)
P 		441.7
(3)
P 		166
B 336
(-1.9)
P 		273.2
(-3)
P 		353.9
(-1.6)
P 		609.6
(3)
P 		336
C 325.8
(-2.6)
P 		312.6
(-3)
P 		519.9
(2.5)
P 		536.9
(3)
P 		224
avr 338.8
(-1.7) 		287.1
(-3) 		420.1
(0.3) 		529.4
(3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 372
1 2 3 4 5 6 range
A 209.2
(-3)
P 		560.4
(3)
P 		300.5
(-1.4)
P 		293.6
(-1.6)
P 		277.1
(-1.8)
P 		322.6
(-1.1)
P 		351
B 508.3
(3)
P 		484.8
(2.4)
P 		288.3
(-3)
P 		331
(-1.8)
P 		505.2
(2.9)
P 		479.6
(2.2)
P 		220
C 453.7
(2)
P 		451.6
(2)
P 		310.5
(-0.7)
P 		188.8
(-3)
P 		326
(-0.4)
P 		503.8
(3)
P 		315
avr 390.4
(0.1) 		498.9
(3) 		299.8
(-2.2) 		271.1
(-3) 		369.4
(-0.4) 		435.3
(1.3) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171968_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27901
Sequence Type Exemplar sequence
Representative Public ID AV180835 NCBI
Target Description AV180835_rc /REP_DB=TREMBL Accession /GB=AV180835 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk612g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072051 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-19) (dnj-19) mRNA, complete cds. 11/11 A 
SNAP00000006790 ENSEMBL cdna:SNAP chromosome:CEL140:V:5503050:5504657:-1 9/11 None
GENEFINDER00000006792 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5503050:5504662:-1 9/11 None
T05C3.5 ENSEMBL cdna:known chromosome:CEL140:V:5502845:5504657:-1 gene:T05C3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5503009-5503215(-) 64.78 64.78
Public Domain and Genome References
Gene Title DNAJ-like protein
Gene Symbol dnj-19
Ensembl T05C3.5
Entrez Gene 3565862 Entrez gene
SwissProt O16303 EMBL-EBI
WormBase CE13229 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15136_S_AT DNAJ heat shock protein, putative (J3) at
ATGENOME1:18989_S_AT DNAJ heat shock protein, putative (J3) at
ATH1-121501:252670_AT DNAJ heat shock protein, putative (J3) at
CHICKEN:GGAAFFX.12740.1.S1_AT DnaJ (Hsp40) homolog, subfamily A, member 2 gga
CHICKEN:GGAAFFX.2544.1.S1_AT DnaJ (Hsp40) homolog, subfamily A, member 2 gga
CHICKEN:GGAAFFX.2544.1.S1_S_AT DnaJ (Hsp40) homolog, subfamily A, member 2 gga
HG-FOCUS:209157_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U133A:209157_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U133_PLUS_2:209157_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U133A_2:209157_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HU35KSUBB:RC_R41281_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HU35KSUBC:RC_W72906_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
U133_X3P:G2352903_3P_X_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
U133_X3P:G2352903_3P_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
U133_X3P:G2352903_3P_A_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U133B:223850_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U133_PLUS_2:223850_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HU35KSUBC:RC_AA235580_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
U133_X3P:G7959938_3P_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
U133_X3P:HS.21189.2.A1_3P_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U133_PLUS_2:226994_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U133B:226994_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U95AV2:34201_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U95B:51644_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U95D:79763_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U95D:91140_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U133_PLUS_2:231508_S_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U133B:231508_S_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
HG-U95E:79707_R_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
U133_X3P:HS.21189.3.A1_3P_AT DnaJ (Hsp40) homolog, subfamily A, member 2 hs
MOE430B:1429476_S_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MOUSE430_2:1429476_S_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MOE430A:1417183_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MOUSE430_2:1417183_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MOUSE430A_2:1417183_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MOUSE430_2:1417182_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MOUSE430A_2:1417182_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MOE430A:1417182_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MU11KSUBA:AA608174_S_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MU11KSUBB:MSA.25157.0_S_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MG-U74AV2:95068_AT DnaJ (Hsp40) homolog, subfamily A, member 2 mm
MOE430B:1457233_AT DnaJ (Hsp40) homolog, subfamily A, member 2, mRNA (cDNA clone MGC:6445 IMAGE:2582183) mm
MOUSE430_2:1457233_AT DnaJ (Hsp40) homolog, subfamily A, member 2, mRNA (cDNA clone MGC:6445 IMAGE:2582183) mm
MU19KSUBB:TC32563_AT DnaJ (Hsp40) homolog, subfamily A, member 2, mRNA (cDNA clone MGC:6445 IMAGE:2582183) mm
MU19KSUBC:TC37078_AT DnaJ (Hsp40) homolog, subfamily A, member 2, mRNA (cDNA clone MGC:6445 IMAGE:2582183) mm
MU19KSUBC:TC37078_G_AT DnaJ (Hsp40) homolog, subfamily A, member 2, mRNA (cDNA clone MGC:6445 IMAGE:2582183) mm
RT-U34:RC_AI170685_G_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RG-U34A:RC_AI170685_G_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RT-U34:U95727_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RG-U34A:U95727_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RT-U34:RC_AI170685_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RG-U34A:RC_AI170685_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RAE230A:1387780_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RAT230_2:1387780_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RAE230A:1372849_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RAT230_2:1372849_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RG-U34C:RC_AI072269_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
RG-U34C:RC_AI229183_AT DnaJ (Hsp40) homolog, subfamily A, member 2 rn
YEAST_2:1775968_AT Protein chaperone involved in regulation of the HSP90 and HSP70 functions; involved in protein translocation across membranes; member of the DnaJ family Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6457 protein folding inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504452 DNaJ domain (prokaryotic heat shock protein) family member (dnj-19) [Caenorhabditis elegans] gb|AAB65361.1| Dnaj domain (prokaryotic heat shock protein) protein 19 [Caenorhabditis elegans] 0.0
blast CAE64623 Hypothetical protein CBG09381 [Caenorhabditis briggsae] 1.0E-132
blast AAC19208 Dnaj domain (prokaryotic heat shock protein) protein 6 [Caenorhabditis elegans] ref|NP_504454.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-6) [Caenorhabditis elegans] 1.0E-102
blast AAC19208 Dnaj domain (prokaryotic heat shock protein) protein 6 [Caenorhabditis elegans] ref|NP_504454.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-6) [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 5.99999980959314E-21
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 4.99999984132761E-21
Pfam IPR002939 EMBL-EBI Chaperone DnaJ, C-terminal 8.3E-12
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 2.6E-33
Pfam IPR001305 EMBL-EBI DnaJ central domain (CXXCXGXG) 6.0E-27
Pfam IPR002939 EMBL-EBI Chaperone DnaJ, C-terminal 8.3E-12
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 2.6E-33
Pfam IPR001305 EMBL-EBI DnaJ central domain (CXXCXGXG) 6.0E-27
Sequence
Target Sequence 
>C. ELEGANS:171968_X_AT
caaaagttgtcaatgtcaccccagctgccgcagaagtttctcttatggaatatgacgaga
agaagtacagccgaggacgtggcggagacgcttacaatgaagattcggacgaagaacaac
acggaggacatcacggacaaggcgtcagatgccaacaccaatagtcaagttttattccag
tttatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAAGTTGTCAATGTCACCCCAGC 239 191 15 Antisense
CCCAGCTGCCGCAGAAGTTTCTCTT 122 259 34 Antisense
GAAGTTTCTCTTATGGAATATGACG 187 337 47 Antisense
GAAGTACAGCCGAGGACGTGGCGGA 290 337 76 Antisense
GAGGACGTGGCGGAGACGCTTACAA 259 405 87 Antisense
GACGCTTACAATGAAGATTCGGACG 31 381 101 Antisense
GATTCGGACGAAGAACAACACGGAG 42 431 116 Antisense
GAACAACACGGAGGACATCACGGAC 80 353 128 Antisense
GGACATCACGGACAAGGCGTCAGAT 666 525 140 Antisense
GCGTCAGATGCCAACACCAATAGTC 18 293 156 Antisense
GTCAAGTTTTATTCCAGTTTATCAT 621 463 178 Antisense
Sequence Source Affymetrix Proprietary Database