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[171967_x_at]

Description AV199699_rc /REP_DB=TREMBL Accession /GB=AV199699 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk550d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 05      4grp_high_8_8 > 46      6grp_highest_nonorm > 80      6grp_total > 04      4grp_total > 40      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 121.7
(0.4)
M 		61.8
(-3)
A 		154.2
(2.3)
P 		166.2
(3)
A 		104
B 98
(-2.7)
P 		87.8
(-3)
A 		270
(3)
P 		176.5
(-0.1)
P 		182
C 210.9
(2.3)
P 		219.9
(3)
P 		208.9
(2.2)
P 		138.4
(-3)
P 		82
avr 143.5
(-1.6) 		123.2
(-3) 		211
(3) 		160.4
(-0.5) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 201.6
(1.4)
P 		225.9
(3)
P 		149.8
(-1.9)
P 		212.9
(2.2)
P 		215.3
(2.3)
P 		132.4
(-3)
P 		94
B 260.1
(2)
P 		235.7
(0.7)
P 		279.8
(3)
P 		162.6
(-3)
P 		181.2
(-2)
P 		178.4
(-2.2)
P 		117
C 257
(3)
P 		195.3
(-0.9)
P 		191.9
(-1.1)
P 		193.9
(-1)
P 		231.4
(1.4)
P 		162
(-3)
P 		95
avr 239.6
(3) 		219
(1.5) 		207.2
(0.6) 		189.8
(-0.6) 		209.3
(0.8) 		157.6
(-3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 44.3
(3)
M 		13.4
(-3)
A 		40.3
(2.2)
P 		24.3
(-0.9)
A 		31
B 31.2
(-1.6)
P 		21.7
(-3)
A 		62.6
(3)
P 		37.6
(-0.7)
P 		41
C 69.8
(2.6)
P 		63.2
(1.8)
P 		72.8
(3)
P 		23.3
(-3)
P 		50
avr 48.4
(1) 		32.8
(-2.1) 		58.6
(3) 		28.4
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 37.2
(-2.4)
P 		80.3
(3)
P 		32.6
(-3)
P 		54
(-0.3)
P 		65
(1.1)
P 		32.2
(-3)
P 		48
B 90.5
(3)
P 		78.5
(1.5)
P 		67.9
(0.1)
P 		43.1
(-3)
P 		73.6
(0.9)
P 		66.5
(-0)
P 		47
C 95.3
(3)
P 		59.6
(-0.8)
P 		48.8
(-2)
P 		39
(-3)
P 		74.9
(0.8)
P 		54.2
(-1.4)
P 		56
avr 74.3
(3) 		72.8
(2.7) 		49.8
(-2.1) 		45.4
(-3) 		71.2
(2.4) 		51
(-1.8) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171967_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27863
Sequence Type Exemplar sequence
Representative Public ID AV199699 NCBI
Target Description AV199699_rc /REP_DB=TREMBL Accession /GB=AV199699 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk550d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070279(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070279 NCBI Caenorhabditis elegans C27H2.3 (C27H2.3) mRNA, complete cds. 10/11 A 
C27H2.3 ENSEMBL cdna:known chromosome:CEL140:IV:13952684:13963969:1 gene:C27H2.3 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005807 5/11 Cross Hyb Matching Probes None
GENEFINDER00000005813 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13963159-13963798(+) 67.79 67.79
Public Domain and Genome References
Gene Title
Ensembl C27H2.3
Entrez Gene 178356 Entrez gene
SwissProt O45269 EMBL-EBI
WormBase CE15641 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05123 Hypothetical protein C27H2.3 [Caenorhabditis elegans] ref|NP_502680.1| C27H2.3 [Caenorhabditis elegans] 0.0
blast CAE74663 Hypothetical protein CBG22464 [Caenorhabditis briggsae] 0.0
blast CAE71779 Hypothetical protein CBG18780 [Caenorhabditis briggsae] 7.0E-68
Sequence
Target Sequence 
>C. ELEGANS:171967_X_AT
actgatgctcgtcttggagcactaaaggctnttgccannnntgataatccccgaataaca
aaaccaatctcctacgtggccgatcatgacgtatcggatgacgtcagacgctttgccacg
tcaatgttacgtggattcgaggaggaagtcacgcggatttaaaagtgccacgtcatcatt
tatccatgacaataactcattttgttctctgtaatttgttcatactgaaattatatttcc
ccttgttcaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGATGCTCGTCTTGGAGCACTAA 653 97 13 Antisense
GAATAACAAAACCAATCTCCTACGT 563 325 65 Antisense
TCTCCTACGTGGCCGATCATGACGT 201 611 80 Antisense
GGATGACGTCAGACGCTTTGCCACG 505 513 108 Antisense
ACGCTTTGCCACGTCAATGTTACGT 507 91 120 Antisense
TCGAGGAGGAAGTCACGCGGATTTA 435 601 149 Antisense
CGCGGATTTAAAAGTGCCACGTCAT 658 247 164 Antisense
GCCACGTCATCATTTATCCATGACA 676 279 179 Antisense
GACAATAACTCATTTTGTTCTCTGT 584 363 200 Antisense
GTTCTCTGTAATTTGTTCATACTGA 565 443 216 Antisense
TGAAATTATATTTCCCCTTGTTCAA 408 571 238 Antisense
Sequence Source Affymetrix Proprietary Database