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[171966_x_at]

Description AV182528_rc /REP_DB=TREMBL Accession /GB=AV182528 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 64      6grp_total > 91      4grp_total > 57      6grp_highest_sub > 04_05      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1243
1 2 3 4 range
A 500
(-3)
P 		1160.5
(3)
P 		1107.1
(2.5)
P 		496.4
(-3)
P 		664
B 374.5
(-3)
P 		1047.3
(3)
P 		1041.9
(3)
P 		401.7
(-2.8)
P 		673
C 769
(-1.4)
P 		1097.8
(0.3)
P 		1617.5
(3)
P 		456.2
(-3)
P 		1161
avr 547.8
(-2.3) 		1101.9
(1.9) 		1255.5
(3) 		451.4
(-3) 		804

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 838
1 2 3 4 5 6 range
A 961.7
(-0.1)
P 		704.7
(-2.1)
P 		878.5
(-0.7)
P 		1340.2
(3)
P 		1208.7
(1.9)
P 		597.6
(-3)
P 		743
B 1013.5
(-0.4)
P 		762.3
(-2.6)
P 		907.9
(-1.3)
P 		1352.5
(2.6)
P 		1398.6
(3)
P 		719.1
(-3)
P 		680
C 1071.1
(0.1)
P 		685.8
(-3)
P 		894.5
(-1.3)
P 		1099.4
(0.3)
P 		1435.2
(3)
P 		699.2
(-2.9)
P 		749
avr 1015.4
(0.1) 		717.6
(-2.6) 		893.6
(-1) 		1264
(2.3) 		1347.5
(3) 		672
(-3) 		676
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 491
1 2 3 4 range
A 182
(0)
P 		251.9
(2)
P 		289.4
(3)
P 		72.7
(-3)
P 		217
B 119.4
(-1.8)
P 		258.7
(3)
P 		241.4
(2.4)
P 		85.6
(-3)
P 		173
C 254.6
(-0.8)
P 		315.6
(-0.1)
P 		563.7
(3)
P 		76.9
(-3)
P 		487
avr 185.3
(-0.8) 		275.4
(1.1) 		364.8
(3) 		78.4
(-3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 177.3
(-2.1)
P 		250.6
(-0.1)
P 		191.3
(-1.7)
P 		339.9
(2.3)
P 		364.7
(3)
P 		145.5
(-3)
P 		219
B 352.6
(-0.7)
P 		253.7
(-2.4)
P 		220.5
(-3)
P 		358.2
(-0.6)
P 		568.2
(3)
P 		268.2
(-2.2)
P 		348
C 397
(1.4)
P 		209.3
(-3)
P 		227.7
(-2.6)
P 		221.1
(-2.7)
P 		464.4
(3)
P 		234.1
(-2.4)
P 		255
avr 309
(-0.7) 		237.9
(-2.4) 		213.2
(-3) 		306.4
(-0.8) 		465.8
(3) 		215.9
(-2.9) 		253
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171966_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27801
Sequence Type Exemplar sequence
Representative Public ID AV182528 NCBI
Target Description AV182528_rc /REP_DB=TREMBL Accession /GB=AV182528 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029635, NM_001029636
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029636 NCBI Caenorhabditis elegans M03F4.7b (M03F4.7) mRNA, complete cds. None
SNAP00000026192 ENSEMBL cdna:SNAP chromosome:CEL140:X:4969760:4970862:-1 None
GENEFINDER00000026200 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4969760:4970862:-1 None
M03F4.7a.1 ENSEMBL cdna:known chromosome:CEL140:X:4969508:4970878:-1 gene:M03F4.7 None
M03F4.7a.2 ENSEMBL cdna:known chromosome:CEL140:X:4969508:4970883:-1 gene:M03F4.7 None
M03F4.7b ENSEMBL cdna:known chromosome:CEL140:X:4969521:4970862:-1 gene:M03F4.7 A 
NM_001029635 NCBI Caenorhabditis elegans M03F4.7a (M03F4.7) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4969641-4969846(-) 62.71 62.71
Public Domain and Genome References
Ensembl M03F4.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04578 Hypothetical protein M03F4.7a [Caenorhabditis elegans] ref|NP_001024806.1| M03F4.7a [Caenorhabditis elegans] gb|AAF34189.1| calumenin-like protein [Caenorhabditis elegans] 1.0E-180
blast CAE68672 Hypothetical protein CBG14576 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.02
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.012
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0094
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.018
Sequence
Target Sequence 
>C. ELEGANS:171966_X_AT
tggattttggaggaattcgtcgccccctacgacacattcgtcggatccccagcccaccga
ctacggagagcaactccagaaacacgacccagccgagctctaaaannnnngnnnnnctcc
caaacagtattacgcgaaaattctcatttgagatctgttagtaataataatgtgtgactg
gtcttcgaaactcattcttacttaac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATTTTGGAGGAATTCGTCGCCC 405 551 16 Antisense
CCCTACGACACATTCGTCGGATCCC 191 257 40 Antisense
AGCCCACCGACTACGGAGAGCAACT 144 83 66 Antisense
GGAGAGCAACTCCAGAAACACGACC 379 519 80 Antisense
CTCCCAAACAGTATTACGCGAAAAT 498 231 132 Antisense
GTATTACGCGAAAATTCTCATTTGA 482 453 142 Antisense
TTCTCATTTGAGATCTGTTAGTAAT 275 689 156 Antisense
AATAATAATGTGTGACTGGTCTTCG 362 171 178 Antisense
GTGTGACTGGTCTTCGAAACTCATT 658 485 187 Antisense
GACTGGTCTTCGAAACTCATTCTTA 14 377 191 Antisense
TCTTCGAAACTCATTCTTACTTAAC 518 615 197 Antisense
Sequence Source Affymetrix Proprietary Database