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[171965_x_at]

Description AV182530_rc /REP_DB=TREMBL Accession /GB=AV182530 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 93      6grp_total > 97      4grp_total > 02      6grp_highest_sub > Da      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 207
(-3)
P 		217.3
(-2.7)
P 		231.3
(-2.4)
P 		437.1
(3)
P 		230
B 251.3
(-1.5)
P 		199.9
(-2.6)
P 		181.6
(-3)
P 		466.4
(3)
P 		285
C 234.4
(-2.3)
P 		192.3
(-3)
P 		238.8
(-2.2)
P 		544.5
(3)
P 		352
avr 230.9
(-2.4) 		203.2
(-3) 		217.2
(-2.7) 		482.7
(3) 		280

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 892
1 2 3 4 5 6 range
A 172.3
(-3)
P 		208.4
(-2.7)
P 		199.4
(-2.8)
P 		255.3
(-2.2)
P 		520.8
(0.2)
P 		827.4
(3)
P 		655
B 209.3
(-2.7)
P 		188.2
(-2.9)
P 		169.1
(-3)
P 		277.7
(-2.2)
P 		695.9
(0.9)
P 		984
(3)
P 		815
C 230.5
(-2.4)
P 		146.7
(-3)
P 		192.6
(-2.7)
P 		308.1
(-1.9)
P 		588.9
(-0)
P 		1038.3
(3)
P 		892
avr 204
(-2.8) 		181.1
(-3) 		187
(-3) 		280.4
(-2.2) 		601.9
(0.3) 		949.9
(3) 		769
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 75.4
(3)
P 		47.2
(-3)
P 		60.5
(-0.2)
P 		64
(0.6)
P 		28
B 80.1
(1)
P 		49.4
(-2.2)
P 		42.1
(-3)
P 		99.4
(3)
P 		57
C 77.6
(0.7)
P 		55.3
(-3)
P 		83.2
(1.6)
P 		91.8
(3)
P 		37
avr 77.7
(1.7) 		50.6
(-3) 		61.9
(-1) 		85.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 335
1 2 3 4 5 6 range
A 31.8
(-3)
P 		74.1
(-1.5)
P 		43.4
(-2.6)
P 		64.7
(-1.8)
P 		157.2
(1.4)
P 		201.4
(3)
P 		170
B 72.8
(-2.4)
P 		62.6
(-2.6)
P 		41.1
(-3)
P 		73.6
(-2.4)
P 		282.7
(1.4)
P 		366.9
(3)
P 		326
C 85.4
(-2.2)
P 		44.8
(-3)
P 		49
(-2.9)
P 		62
(-2.7)
P 		190.6
(-0.1)
P 		347.6
(3)
P 		303
avr 63.3
(-2.6) 		60.5
(-2.6) 		44.5
(-3) 		66.8
(-2.5) 		210.2
(0.8) 		305.3
(3) 		261
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171965_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27793
Sequence Type Exemplar sequence
Representative Public ID AV182530 NCBI
Target Description AV182530_rc /REP_DB=TREMBL Accession /GB=AV182530 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070468(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070468 NCBI Caenorhabditis elegans Y73F8A.34 (Y73F8A.34) mRNA, complete cds. 11/11 A 
SNAP00000030839 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15524179:15528490:-1 11/11 None
GENEFINDER00000030905 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15524179:15526067:-1 11/11 None
Y73F8A.34.1 ENSEMBL cdna:known chromosome:CEL140:IV:15524079:15528605:-1 gene:Y73F8A.34 11/11 None
Y73F8A.34.2 ENSEMBL cdna:known chromosome:CEL140:IV:15524089:15528491:-1 gene:Y73F8A.34 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076979 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000009231 1/11 Cross Hyb Matching Probes None
SNAP00000009210 2/11 Cross Hyb Matching Probes None
C17H11.4 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15524188-15524501(-) 78.5 78.5
Public Domain and Genome References
Gene Title
Gene Symbol tag-349
Ensembl Y73F8A.34
Entrez Gene 178437 Entrez gene
SwissProt Q9NA31 EMBL-EBI
WormBase CE25598 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15324_AT IBR domain-containing protein at
ATH1-121501:253236_AT IBR domain-containing protein at
Protein Similarities
Method ID Description E-Value
blast CAB70234 Hypothetical protein Y73F8A.34 [Caenorhabditis elegans] ref|NP_502869.1| Y73F8A.34 [Caenorhabditis elegans] 0.0
blast CAE72928 Hypothetical protein CBG20248 [Caenorhabditis briggsae] 1.0E-174
blast AAB93645 Hypothetical protein C27A12.8 [Caenorhabditis elegans] ref|NP_491749.2| ARI (ubiquitin ligase Ariadne) homolog family member (ari-1) [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 2.6E-25
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 2.6E-25
Sequence
Target Sequence 
>C. ELEGANS:171965_X_AT
ccttcgcctactacctggaggcgaacaatatgacgacactgttcgagacgaatcaaagtg
atctcgaattggcgaccgagcagctgtccgggatgttggaaggcgatttggaggataatg
atttggccgaactgaagcggaaggtccaagacaagtaccgctacgtggagctccgccgcn
nnnngatgctcgatcattgtgccgaaggtgtcgagcttgatagttgggtgttctgcg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTCGCCTACTACCTGGAGGCGAA 384 269 16 Antisense
GGAGGCGAACAATATGACGACACTG 553 515 32 Antisense
ATGACGACACTGTTCGAGACGAATC 209 45 45 Antisense
TCGAATTGGCGACCGAGCAGCTGTC 207 601 79 Antisense
GCAGCTGTCCGGGATGTTGGAAGGC 61 315 95 Antisense
GGAGGATAATGATTTGGCCGAACTG 29 515 125 Antisense
GGCCGAACTGAAGCGGAAGGTCCAA 673 533 140 Antisense
AGACAAGTACCGCTACGTGGAGCTC 84 71 164 Antisense
GATGCTCGATCATTGTGCCGAAGGT 510 413 200 Antisense
GTGCCGAAGGTGTCGAGCTTGATAG 197 479 214 Antisense
GAGCTTGATAGTTGGGTGTTCTGCG 527 387 228 Antisense
Sequence Source Affymetrix Proprietary Database