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[171964_s_at]

Description AV182539_rc /REP_DB=TREMBL Accession /GB=AV182539 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 87      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 77      6grp_total > 76      4grp_total > 09      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1907
1 2 3 4 range
A 1437.8
(-3)
P 		1570.5
(-2.5)
P 		1760.7
(-1.7)
P 		2965.7
(3)
P 		1528
B 1115.4
(-3)
P 		1329.6
(-2.3)
P 		1499.2
(-1.8)
P 		3022.4
(3)
P 		1907
C 1262.7
(-2.9)
P 		1232
(-3)
P 		1500.1
(-1.9)
P 		2665.6
(3)
P 		1434
avr 1272
(-3) 		1377.4
(-2.6) 		1586.7
(-1.8) 		2884.6
(3) 		1613

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 858
1 2 3 4 5 6 range
A 1398.2
(0.2)
P 		1045.5
(-3)
P 		1294.2
(-0.7)
P 		1404.8
(0.3)
P 		1381.5
(0.1)
P 		1701.7
(3)
P 		656
B 1139.6
(-3)
P 		1210.7
(-2.3)
P 		1563
(1.1)
P 		1278.4
(-1.7)
P 		1764.3
(3)
P 		1684.3
(2.2)
P 		625
C 1545.1
(0.3)
P 		1093.5
(-3)
P 		1170.2
(-2.4)
P 		1653.5
(1.1)
P 		1098
(-3)
P 		1903.7
(3)
P 		810
avr 1361
(-0.7) 		1116.6
(-3) 		1342.5
(-0.9) 		1445.6
(0.1) 		1414.6
(-0.2) 		1763.2
(3) 		647
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 316
1 2 3 4 range
A 523.5
(3)
P 		340.9
(-3)
P 		460.3
(0.9)
P 		434.1
(0.1)
P 		183
B 355.7
(-2.5)
P 		328.4
(-3)
P 		347.4
(-2.6)
P 		644.1
(3)
P 		316
C 418
(-0.7)
P 		354.2
(-3)
P 		522.8
(3)
P 		449.5
(0.4)
P 		169
avr 432.4
(0.3) 		341.2
(-3) 		443.5
(0.7) 		509.2
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 459
1 2 3 4 5 6 range
A 257.7
(-3)
P 		371.8
(1.3)
P 		281.8
(-2.1)
P 		356.3
(0.7)
P 		416.9
(3)
P 		414.3
(2.9)
P 		159
B 396.5
(-2.1)
P 		403
(-2)
P 		379.6
(-2.3)
P 		338.6
(-3)
P 		716.8
(3)
P 		628.1
(1.6)
P 		378
C 572.7
(1.9)
P 		333.6
(-2.4)
P 		297.8
(-3)
P 		332.5
(-2.4)
P 		355.3
(-2)
P 		637.3
(3)
P 		340
avr 409
(-0.8) 		369.5
(-1.8) 		319.7
(-3) 		342.5
(-2.4) 		496.3
(1.4) 		559.9
(3) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171964_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27792
Sequence Type Exemplar sequence
Representative Public ID AV182539 NCBI
Target Description AV182539_rc /REP_DB=TREMBL Accession /GB=AV182539 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066231 NCBI Caenorhabditis elegans T20B12.7 (T20B12.7) mRNA, complete cds. 11/11 A 
SNAP00000022557 ENSEMBL cdna:SNAP chromosome:CEL140:III:7377998:7378965:-1 11/11 None
GENEFINDER00000022565 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7377998:7378965:-1 11/11 None
T20B12.7.1 ENSEMBL cdna:known chromosome:CEL140:III:7377774:7378965:-1 gene:T20B12.7 11/11 None
T20B12.7.2 ENSEMBL cdna:known chromosome:CEL140:III:7377810:7378967:-1 gene:T20B12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7377871-7378100(-) 71.56 71.56
Public Domain and Genome References
Gene Title
Ensembl T20B12.7
Entrez Gene 176051 Entrez gene
SwissProt P41847 EMBL-EBI
WormBase CE01413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA19060 Hypothetical protein T20B12.7 [Caenorhabditis elegans] ref|NP_498632.1| T20B12.7 [Caenorhabditis elegans] sp|P41847|YO97_CAEEL Hypothetical protein T20B12.7 in chromosome III 1.0E-134
blast CAE64432 Hypothetical protein CBG09135 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR007785 EMBL-EBI Protein of unknown function DUF689 5.5E-98
Sequence
Target Sequence 
>C. ELEGANS:171964_S_AT
tgttcccttggagatgcattccgatgctccacctgcccatatctcggacaaccaccattc
aagccaggcgagactgtcaaaatctcgacggtcgacgacttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCCCTTGGAGATGCATTCCGAT 78 553 56 Antisense
GTTCCCTTGGAGATGCATTCCGATG 454 441 57 Antisense
TCCCTTGGAGATGCATTCCGATGCT 593 595 59 Antisense
TGGAGATGCATTCCGATGCTCCACC 240 549 64 Antisense
CCACCATTCAAGCCAGGCGAGACTG 553 273 107 Antisense
ACCATTCAAGCCAGGCGAGACTGTC 287 85 109 Antisense
CATTCAAGCCAGGCGAGACTGTCAA 260 215 111 Antisense
GAGACTGTCAAAATCTCGACGGTCG 517 391 125 Antisense
GACTGTCAAAATCTCGACGGTCGAC 55 369 127 Antisense
CTGTCAAAATCTCGACGGTCGACGA 532 235 129 Antisense
AAATCTCGACGGTCGACGACTTCTA 16 119 135 Antisense
Sequence Source Affymetrix Proprietary Database