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[171963_x_at]

Description AU114543_rc /REP_DB=TREMBL Accession /GB=AU114543 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720e12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 0      6grp_total > 26      4grp_total > 16      6grp_highest_sub > 01_02      6grp_cgc > 14      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2023
1 2 3 4 range
A 2169.5
(-3)
P 		2817.1
(-0.7)
P 		3218.2
(0.8)
P 		3823.5
(3)
P 		1654
B 2456.4
(-3)
P 		2517.3
(-2.7)
P 		2862.4
(-1.3)
P 		3858.9
(3)
P 		1403
C 1835.8
(-3)
P 		2301.3
(-1.4)
P 		2577.6
(-0.4)
P 		3552.8
(3)
P 		1717
avr 2153.9
(-3) 		2545.2
(-1.5) 		2886.1
(-0.2) 		3745.1
(3) 		1591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1320
1 2 3 4 5 6 range
A 2308.3
(3)
P 		1836.7
(0.1)
P 		1424.3
(-2.5)
P 		1335.6
(-3)
P 		1340.3
(-3)
P 		1550.2
(-1.7)
P 		973
B 1923.4
(2.5)
P 		2009
(3)
P 		988.7
(-3)
P 		1711.7
(1.3)
P 		1553.1
(0.3)
P 		1729.3
(1.4)
P 		1020
C 1726.1
(1.7)
P 		1914.2
(3)
P 		1678.5
(1.4)
P 		1460.4
(-0.2)
P 		1231.8
(-1.8)
P 		1056.2
(-3)
P 		858
avr 1985.9
(3) 		1920
(2.4) 		1363.8
(-3) 		1502.6
(-1.7) 		1375.1
(-2.9) 		1445.2
(-2.2) 		622
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 789.9
(1.9)
P 		611.5
(-1.9)
P 		841.3
(3)
P 		559.7
(-3)
P 		282
B 783.3
(1.8)
P 		621.7
(-3)
P 		663.3
(-1.8)
P 		822.3
(3)
P 		201
C 607.7
(-2.8)
P 		661.7
(-1.7)
P 		898.4
(3)
P 		599.1
(-3)
P 		299
avr 727
(0.4) 		631.6
(-3) 		801
(3) 		660.4
(-2) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 425.5
(-1)
P 		653.2
(3)
P 		310.2
(-3)
P 		338.7
(-2.5)
P 		404.4
(-1.4)
P 		377.4
(-1.8)
P 		343
B 669.3
(3)
P 		668.7
(3)
P 		240.1
(-3)
P 		453.4
(-0)
P 		631
(2.5)
P 		644.9
(2.7)
P 		429
C 639.8
(3)
P 		584.1
(2)
P 		427.2
(-0.7)
P 		293.7
(-3)
P 		398.6
(-1.2)
P 		353.6
(-2)
P 		346
avr 578.2
(1.9) 		635.3
(3) 		325.8
(-3) 		361.9
(-2.3) 		478
(-0) 		458.6
(-0.4) 		310
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171963_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27713
Sequence Type Exemplar sequence
Representative Public ID AU114543 NCBI
Target Description AU114543_rc /REP_DB=TREMBL Accession /GB=AU114543 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk720e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171135(9), NM_171136(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171135 NCBI Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-6) (cct-6) mRNA, complete cds. 9/11 A 
NM_171136 NCBI Caenorhabditis elegans Chaperonin Containing TCP-1 family member (cct-6) (cct-6) mRNA, complete cds. 9/11 None
F01F1.8a ENSEMBL cdna:known chromosome:CEL140:III:5853496:5855632:-1 gene:F01F1.8 9/11 A 
F01F1.8b.1 ENSEMBL cdna:known chromosome:CEL140:III:5853497:5855637:-1 gene:F01F1.8 9/11 None
F01F1.8b.3 ENSEMBL cdna:known chromosome:CEL140:III:5853497:5855633:-1 gene:F01F1.8 9/11 None
F01F1.8b.2 ENSEMBL cdna:known chromosome:CEL140:III:5853497:5855643:-1 gene:F01F1.8 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009918 3/11 Cross Hyb Matching Probes None
GENEFINDER00000009933 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5853619-5853847(-) 75.42 75.42
Public Domain and Genome References
Ensembl F01F1.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46642 Chaperonin containing tcp-1 protein 6, isoform a [Caenorhabditis elegans] ref|NP_741153.1| Chaperonin Containing TCP-1 family member (cct-6) [Caenorhabditis elegans] sp|P46550|TCPZ_CAEEL T-complex protein 1, zeta subunit (TCP-1-zeta) (CCT-zeta) 0.0
blast CAE64385 Hypothetical protein CBG09073 [Caenorhabditis briggsae] 0.0
blast AAM22058 Chaperonin containing tcp-1 protein 6, isoform b [Caenorhabditis elegans] ref|NP_741154.1| Chaperonin Containing TCP-1 family member (cct-6) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 1.0E-126
Pfam IPR002423 EMBL-EBI Chaperonin Cpn60/TCP-1 7.6E-119
Sequence
Target Sequence 
>C. ELEGANS:171963_X_AT
agtacttgcatgcaatttcttgcttgttgatgaagtgatgcgcgctggtatgaccaactt
gaagcagccacaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagtgtgtccg
tttctatgatctgttgccgtgtttgataatattccccatcccgttcaacaagcccaactt
taccgtttgnnnnnatagctttcttcgagcgataatcaac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTACTTGCATGCAATTTCTTGCTT 113 63 13 Antisense
GCAATTTCTTGCTTGTTGATGAAGT 303 323 24 Antisense
GTTGATGAAGTGATGCGCGCTGGTA 323 437 38 Antisense
AGTGATGCGCGCTGGTATGACCAAC 431 59 46 Antisense
GTATGACCAACTTGAAGCAGCCACA 22 455 60 Antisense
TGTGTCCGTTTCTATGATCTGTTGC 638 555 125 Antisense
TTTCTATGATCTGTTGCCGTGTTTG 336 671 133 Antisense
GTTGCCGTGTTTGATAATATTCCCC 32 441 145 Antisense
GTGTTTGATAATATTCCCCATCCCG 244 479 151 Antisense
TCAACAAGCCCAACTTTACCGTTTG 414 629 177 Antisense
TAGCTTTCTTCGAGCGATAATCAAC 307 649 208 Antisense
Sequence Source Affymetrix Proprietary Database