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[171962_x_at]

Description AV180653_rc /REP_DB=TREMBL Accession /GB=AV180653 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610c7 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 47      6grp_total > 49      4grp_total > 55      6grp_cgc > 07      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 157.6
(3)
A 		93
(-1.8)
A 		104.7
(-0.9)
P 		76.6
(-3)
A 		81
B 144.7
(3)
P 		123.6
(1.3)
A 		70.2
(-3)
A 		128.2
(1.7)
P 		75
C 97.4
(0.5)
A 		34
(-3)
A 		142.8
(3)
A 		77.1
(-0.6)
A 		109
avr 133.2
(3) 		83.5
(-3) 		105.9
(-0.3) 		94
(-1.7) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 163.5
(1.8)
P 		119.7
(0.2)
P 		35.5
(-3)
A 		132.5
(0.7)
P 		102.6
(-0.5)
P 		194.6
(3)
P 		159
B 198.5
(3)
P 		66.3
(-3)
P 		134.8
(0.1)
P 		115.2
(-0.8)
P 		120.8
(-0.5)
P 		141.3
(0.4)
P 		132
C 198.3
(3)
P 		108.8
(-0.5)
A 		110
(-0.5)
P 		46.4
(-3)
A 		98.1
(-1)
P 		157.3
(1.4)
P 		152
avr 186.8
(3) 		98.3
(-2.7) 		93.4
(-3) 		98
(-2.7) 		107.2
(-2.1) 		164.4
(1.6) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 57.4
(3)
A 		20.2
(-1.8)
A 		27.4
(-0.9)
P 		11.2
(-3)
A 		46
B 46.1
(3)
P 		30.5
(-0.1)
A 		16.3
(-3)
A 		27.3
(-0.8)
P 		30
C 32.2
(0.4)
A 		9.8
(-3)
A 		49.8
(3)
A 		13
(-2.5)
A 		40
avr 45.2
(3) 		20.2
(-2.4) 		31.2
(-0) 		17.2
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 30.1
(0.4)
P 		42.6
(2.3)
P 		7.7
(-3)
A 		33.6
(0.9)
P 		31
(0.5)
P 		47.4
(3)
P 		40
B 69.1
(3)
P 		22.1
(-3)
P 		32.7
(-1.6)
P 		30.5
(-1.9)
P 		49.1
(0.4)
P 		52.7
(0.9)
P 		47
C 73.5
(3)
P 		33.2
(-0.8)
A 		28
(-1.3)
P 		9.3
(-3)
A 		31.7
(-0.9)
P 		52.7
(1.1)
P 		64
avr 57.6
(3) 		32.6
(-1.3) 		22.8
(-3) 		24.5
(-2.7) 		37.3
(-0.5) 		50.9
(1.8) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171962_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27928
Sequence Type Exemplar sequence
Representative Public ID AV180653 NCBI
Target Description AV180653_rc /REP_DB=TREMBL Accession /GB=AV180653 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610c7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV180653
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV180653 AV180653_rc /REP_DB=TREMBL Accession /GB=AV180653 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610c7 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060630 7/11 Cross Hyb Matching Probes A 
GENEFINDER00000000697 7/11 Cross Hyb Matching Probes None
SNAP00000000680 5/11 Cross Hyb Matching Probes None
Y53C10A.12 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171962_X_AT
aaaatggatttgatgtgccggacccaaactacttgccacttgccgacgaggaattcttcc
cacattcaccggctcttcgtactccaagtccatcggatcctaatttggtttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGGATTTGATGTGCCGGACCC 209 133 19 Antisense
TGGATTTGATGTGCCGGACCCAAAC 426 549 23 Antisense
ATTTGATGTGCCGGACCCAAACTAC 401 15 26 Antisense
TTGCCACTTGCCGACGAGGAATTCT 159 701 51 Antisense
CACTTGCCGACGAGGAATTCTTCCC 37 185 55 Antisense
TGCCGACGAGGAATTCTTCCCACAT 612 585 59 Antisense
GACGAGGAATTCTTCCCACATTCAC 624 377 63 Antisense
TCTTCGTACTCCAAGTCCATCGGAT 16 617 92 Antisense
TACTCCAAGTCCATCGGATCCTAAT 344 645 98 Antisense
AAGTCCATCGGATCCTAATTTGGTT 326 1 104 Antisense
TCCATCGGATCCTAATTTGGTTTAA 202 585 107 Antisense
Sequence Source Affymetrix Proprietary Database