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[171961_x_at] GDI-1 GDP dissociation inhibitor

Description AV179946_rc /REP_DB=TREMBL Accession /GB=AV179946 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk600c6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 26      6grp_total > 41      4grp_total > 58      6grp_highest_sub > 03_04      6grp_cgc > 60      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3166
1 2 3 4 range
A 4244
(-1.4)
P 		6390.6
(3)
P 		6257.8
(2.7)
P 		3439.1
(-3)
P 		2952
B 5195.9
(0.1)
P 		6605
(3)
P 		6523
(2.8)
P 		3695.1
(-3)
P 		2910
C 5106.9
(0.2)
P 		6579.6
(3)
P 		6151.6
(2.2)
P 		3459.2
(-3)
P 		3120
avr 4848.9
(-0.4) 		6525.1
(3) 		6310.8
(2.6) 		3531.1
(-3) 		2994

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2401
1 2 3 4 5 6 range
A 6461.8
(3)
P 		5389.2
(-0.1)
P 		6425.4
(2.9)
P 		6006.2
(1.7)
P 		5097.4
(-0.9)
P 		4373.8
(-3)
P 		2088
B 5907
(1.5)
P 		5679.1
(0.9)
P 		6374.7
(2.7)
P 		6509.4
(3)
P 		4272.2
(-2.6)
P 		4108.3
(-3)
P 		2401
C 5468.6
(0.4)
P 		5621.4
(0.9)
P 		6248.8
(2.9)
P 		6287.1
(3)
P 		4874
(-1.5)
P 		4399
(-3)
P 		1888
avr 5945.8
(1.8) 		5563.2
(0.7) 		6349.6
(3) 		6267.6
(2.8) 		4747.9
(-1.7) 		4293.7
(-3) 		2056
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1641
1 2 3 4 range
A 1545.2
(2.5)
P 		1387.2
(1.7)
P 		1635.9
(3)
P 		503.4
(-3)
P 		1133
B 1656.9
(3)
P 		1631.3
(2.8)
P 		1511.5
(2)
P 		787.4
(-3)
P 		870
C 1690.5
(1.3)
P 		1891.7
(2)
P 		2144
(3)
P 		583.3
(-3)
P 		1561
avr 1630.9
(2.3) 		1636.7
(2.3) 		1763.8
(3) 		624.7
(-3) 		1139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 990
1 2 3 4 5 6 range
A 1191.2
(-2.1)
P 		1916.7
(3)
P 		1399.3
(-0.6)
P 		1523.3
(0.2)
P 		1538.2
(0.3)
P 		1064.9
(-3)
P 		852
B 2055.3
(3)
P 		1890.3
(1.1)
P 		1548
(-2.8)
P 		1724.1
(-0.8)
P 		1735.7
(-0.7)
P 		1532
(-3)
P 		523
C 2027
(3)
P 		1715.2
(0.5)
P 		1590.4
(-0.4)
P 		1264.3
(-3)
P 		1577.1
(-0.5)
P 		1472.6
(-1.4)
P 		763
avr 1757.8
(2) 		1840.7
(3) 		1512.6
(-1.1) 		1503.9
(-1.2) 		1617
(0.2) 		1356.5
(-3) 		484
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171961_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27694
Sequence Type Exemplar sequence
Representative Public ID AV179946 NCBI
Target Description AV179946_rc /REP_DB=TREMBL Accession /GB=AV179946 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk600c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070387(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070387 NCBI Caenorhabditis elegans GDI (RabGDP Dissociation Inhibitor) family member (gdi-1) (gdi-1) mRNA, complete cds. 10/11 A 
Y57G11C.10.2 ENSEMBL cdna:known chromosome:CEL140:IV:14790778:14792848:-1 gene:Y57G11C.10 10/11 None
Y57G11C.10.1 ENSEMBL cdna:known chromosome:CEL140:IV:14790778:14792847:-1 gene:Y57G11C.10 10/11 None
Y57G11C.10.3 ENSEMBL cdna:known chromosome:CEL140:IV:14790778:14792849:-1 gene:Y57G11C.10 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003477 6/11 Cross Hyb Matching Probes None
GENEFINDER00000003588 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14790956-14791423(-) 81.17 81.17
Public Domain and Genome References
Gene Title GDI-1 GDP dissociation inhibitor
Gene Symbol gdi-1
Ensembl Y57G11C.10
Entrez Gene 178402 Entrez gene
SwissProt Q21449 EMBL-EBI
WormBase CE14944 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18011_S_AT Rab GDP dissociation inhibitor (GDI2) at
ATH1-121501:251449_AT Rab GDP dissociation inhibitor (GDI2) at
CANINE:1605916_S_AT GDP dissociation inhibitor 1 cfa
CANINE:1582613_AT GDP dissociation inhibitor 1 cfa
CANINE_2:CFA.11322.1.A1_S_AT GDP dissociation inhibitor 1 cfa
CANINE_2:CFA.11322.1.A2_AT GDP dissociation inhibitor 1 cfa
DROSOPHILA_2:1636486_AT GDP dissociation inhibitor dm
DROSGENOME1:143651_AT GDP dissociation inhibitor dm
DROSOPHILA_2:1641129_AT GDP dissociation inhibitor dm
DROSGENOME1:141214_AT GDP dissociation inhibitor dm
HG-U133_PLUS_2:201864_AT GDP dissociation inhibitor 1 hs
HG-U133A:201864_AT GDP dissociation inhibitor 1 hs
HG-FOCUS:201864_AT GDP dissociation inhibitor 1 hs
HG-U133A_2:201864_AT GDP dissociation inhibitor 1 hs
HUGENEFL:X79353_AT GDP dissociation inhibitor 1 hs
U133_X3P:G4503970_3P_AT GDP dissociation inhibitor 1 hs
HG-U95AV2:36152_AT GDP dissociation inhibitor 1 hs
HG-U95D:89908_F_AT GDP dissociation inhibitor 1 hs
MOE430A:1451070_AT guanosine diphosphate (GDP) dissociation inhibitor 1 mm
MOUSE430_2:1451070_AT guanosine diphosphate (GDP) dissociation inhibitor 1 mm
MOUSE430A_2:1451070_AT guanosine diphosphate (GDP) dissociation inhibitor 1 mm
MU11KSUBB:MSA.14128.0_F_AT guanosine diphosphate (GDP) dissociation inhibitor 1 mm
MU11KSUBB:MSA.3106.0_AT guanosine diphosphate (GDP) dissociation inhibitor 1 mm
MU11KSUBB:MSA.3106.0_G_AT guanosine diphosphate (GDP) dissociation inhibitor 1 mm
MU11KSUBB:MSA.12706.0_S_AT guanosine diphosphate (GDP) dissociation inhibitor 1 mm
MG-U74AV2:97313_AT guanosine diphosphate (GDP) dissociation inhibitor 1 mm
MU19KSUBA:TC22715_AT Guanosine diphosphate (GDP) dissociation inhibitor 1, mRNA (cDNA clone MGC:47005 IMAGE:5249271) mm
RG-U34A:X74402_AT guanosine diphosphate dissociation inhibitor 1 rn
RG-U34C:RC_AI103496_AT guanosine diphosphate dissociation inhibitor 1 rn
RAE230A:1387855_AT guanosine diphosphate dissociation inhibitor 1 rn
RAT230_2:1387855_AT guanosine diphosphate dissociation inhibitor 1 rn
YEAST_2:1771417_AT GDP dissociation inhibitor, regulates vesicle traffic in secretory pathways by regulating the dissociation of GDP from the Sec4/Ypt/rab family of GTP binding proteins Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15031 protein transport inferred from electronic annotation QuickGO AmiGO
43087 regulation of GTPase activity inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5093 Rab GDP-dissociation inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16511 Hypothetical protein Y57G11C.10 [Caenorhabditis elegans] ref|NP_502788.1| GDI (RabGDP Dissociation Inhibitor) family member (gdi-1) [Caenorhabditis elegans] gb|AAA17051.1| Guanine nucleotide dissociation inhibitor (GDI) for rab GTPase 0.0
blast CAE73908 Hypothetical protein CBG21516 [Caenorhabditis briggsae] 0.0
blast AAF52777 CG4422-PA [Drosophila melanogaster] ref|NP_523524.2| CG4422-PA [Drosophila melanogaster] gb|AAL39842.1| LD46767p [Drosophila melanogaster] gb|AAO39567.1| LP03430p [Drosophila melanogaster] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR002005 EMBL-EBI Rab GTPase activator 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171961_X_AT
gagttcattcagatttccgatgtttatgagccatctganttgggatctgagtcacagatc
ttcatctctcaatcttangatgntacgactcactttgaaaccacttgcaaggacgtgctc
aacatgttcgaacgtggaacgaccaaagaattcgacttcaccaacatcactcacttgtcg
ttgaatgatcaggaataattgaatatccattcccttcttttgagtactctgatttgacgc
ttctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntnnnnnnnncgattcccgttccgt
ttgtttctcctgtccaatgttcattttca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTCATTCAGATTTCCGATGTTT 232 399 87 Antisense
GAGTCACAGATCTTCATCTCTCAAT 622 399 135 Antisense
TACGACTCACTTTGAAACCACTTGC 564 645 170 Antisense
GAAACCACTTGCAAGGACGTGCTCA 339 359 183 Antisense
AGGACGTGCTCAACATGTTCGAACG 687 53 196 Antisense
AGAATTCGACTTCACCAACATCACT 534 73 233 Antisense
AACATCACTCACTTGTCGTTGAATG 459 135 249 Antisense
AATTGAATATCCATTCCCTTCTTTT 517 177 283 Antisense
ATTCCCTTCTTTTGAGTACTCTGAT 498 7 295 Antisense
TGAGTACTCTGATTTGACGCTTCTG 707 567 307 Antisense
TTCTCCTGTCCAATGTTCATTTTCA 468 693 391 Antisense
Sequence Source Affymetrix Proprietary Database