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[171958_at]

Description AV200983_rc /REP_DB=TREMBL Accession /GB=AV200983 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk584b8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 75      4grp_total > 16      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15130
1 2 3 4 range
A 18696.7
(-3)
P 		23947.5
(-0.3)
P 		24608.5
(0.1)
P 		30252.9
(3)
P 		11556
B 19269.7
(-2.4)
P 		18647.3
(-3)
P 		20628.3
(-1.2)
P 		25299.8
(3)
P 		6653
C 16468.8
(-3)
P 		19585.9
(-1.8)
P 		18785.7
(-2.1)
P 		31598.4
(3)
P 		15130
avr 18145.1
(-3) 		20726.9
(-1.6) 		21340.8
(-1.2) 		29050.4
(3) 		10905

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7109
1 2 3 4 5 6 range
A 18158.1
(-1.3)
P 		17597.6
(-1.9)
P 		19173.5
(-0.2)
P 		22096.3
(3)
P 		16568.4
(-3)
P 		20961
(1.8)
P 		5528
B 15166.2
(-2.6)
P 		16416.8
(0.3)
P 		14987.2
(-3)
P 		15632.2
(-1.5)
P 		16025.2
(-0.6)
P 		17621.6
(3)
P 		2634
C 17371.6
(-1.4)
P 		16478.8
(-3)
P 		19409.7
(2.2)
P 		17435.1
(-1.3)
P 		18028.7
(-0.2)
P 		19852.7
(3)
P 		3374
avr 16898.6
(-2.8) 		16831.1
(-3) 		17856.8
(-0.7) 		18387.9
(0.5) 		16874.1
(-2.9) 		19478.4
(3) 		2647
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2379
1 2 3 4 range
A 6807.5
(3)
P 		5198.4
(-1.1)
P 		6433.1
(2.1)
P 		4428.4
(-3)
P 		2379
B 6145
(3)
P 		4605.5
(-3)
P 		4780
(-2.3)
P 		5391.4
(0.1)
P 		1540
C 5451.6
(-2.4)
P 		5631.1
(-1.5)
P 		6547.4
(3)
P 		5328
(-3)
P 		1219
avr 6134.7
(3) 		5145
(-2.5) 		5920.2
(1.8) 		5049.3
(-3) 		1085

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3299
1 2 3 4 5 6 range
A 3347.3
(-3)
P 		6258.6
(3)
P 		4175.6
(-1.3)
P 		5604.1
(1.7)
P 		4999.6
(0.4)
P 		5103.3
(0.6)
P 		2911
B 5277.1
(0.4)
P 		5464.5
(0.7)
P 		3639.3
(-3)
P 		4140.4
(-2)
P 		6510.8
(2.9)
P 		6571
(3)
P 		2932
C 6438.9
(2.6)
P 		5028.2
(-0.1)
P 		4940.1
(-0.3)
P 		3506.2
(-3)
P 		5833.8
(1.4)
P 		6645.8
(3)
P 		3140
avr 5021.1
(-0.5) 		5583.8
(1.3) 		4251.7
(-3) 		4416.9
(-2.5) 		5781.4
(1.9) 		6106.7
(3) 		1855
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 171958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27740
Sequence Type Exemplar sequence
Representative Public ID AV200983 NCBI
Target Description AV200983_rc /REP_DB=TREMBL Accession /GB=AV200983 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk584b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200983
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200983 AV200983_rc /REP_DB=TREMBL Accession /GB=AV200983 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk584b8 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrM:7434-7747(+) 77.32 94.25
Sequence
Target Sequence 
>C. ELEGANS:171958_AT
tcaaataggggtgtaccaccttctttgtcatttntatcagaannnnnagttatttctaat
agtatattaattagnaaaagtatatttgtnnnnnnttttaattattngtannnnnnnnnn
nnnnnnnnnnnnnnnnnnaatacaagatctttaataggaaaaggttaccataattttaat
acttgaaatgtagggttttcagcaccattagtcttaataa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATAGGGGTGTACCACCTTCTT 224 555 59 Antisense
TTACCATAATTTTAATACTTGAAAT 15 683 223 Antisense
GAAATGTAGGGTTTTCAGCACCATT 250 361 243 Antisense
AATGTAGGGTTTTCAGCACCATTAG 75 157 245 Antisense
TGTAGGGTTTTCAGCACCATTAGTC 548 555 247 Antisense
GTAGGGTTTTCAGCACCATTAGTCT 48 195 248 Antisense
TAGGGTTTTCAGCACCATTAGTCTT 528 649 249 Antisense
AGGGTTTTCAGCACCATTAGTCTTA 559 1 250 Antisense
GGGTTTTCAGCACCATTAGTCTTAA 206 497 251 Antisense
GTTTTCAGCACCATTAGTCTTAATA 139 449 253 Antisense
TTTTCAGCACCATTAGTCTTAATAA 709 675 254 Antisense
Sequence Source Affymetrix Proprietary Database