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[171954_x_at] ribosomal protein S11

Description AV183189_rc /REP_DB=TREMBL Accession /GB=AV183189 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk647f7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 19      6grp_total > 42      4grp_total > 08      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14696
1 2 3 4 range
A 24632.1
(-2.2)
P 		22948.8
(-3)
P 		27299.1
(-0.8)
P 		35078.4
(3)
P 		12130
B 21150.1
(-3)
P 		22958.4
(-1.7)
P 		25309.5
(-0.1)
P 		29610.1
(3)
P 		8460
C 20382.2
(-3)
P 		22098
(-2.1)
P 		21653.2
(-2.3)
P 		31974.1
(3)
P 		11592
avr 22054.8
(-3) 		22668.4
(-2.6) 		24753.9
(-1.4) 		32220.9
(3) 		10166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8313
1 2 3 4 5 6 range
A 22447.5
(0.6)
P 		20129.1
(-1.7)
P 		24756.2
(3)
P 		21054.2
(-0.8)
P 		18890.4
(-3)
P 		19841.7
(-2)
P 		5866
B 20865.3
(1.4)
P 		21171
(1.7)
P 		22473.9
(3)
P 		20259.1
(0.8)
P 		18173.5
(-1.3)
P 		16443.2
(-3)
P 		6031
C 19570.6
(-1.7)
P 		22128.6
(3)
P 		21737.3
(2.3)
P 		21282.3
(1.5)
P 		20161.6
(-0.6)
P 		18840.9
(-3)
P 		3288
avr 20961.1
(0.4) 		21142.9
(0.6) 		22989.1
(3) 		20865.2
(0.2) 		19075.2
(-2.1) 		18375.3
(-3) 		4614
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3987
1 2 3 4 range
A 8968.6
(3)
P 		4981.6
(-3)
P 		7136.5
(0.2)
P 		5134.8
(-2.8)
P 		3987
B 6744.6
(3)
P 		5670.2
(-3)
P 		5864.8
(-1.9)
P 		6309.9
(0.6)
P 		1074
C 6747.1
(0.8)
P 		6353.3
(-0.3)
P 		7546.8
(3)
P 		5391.3
(-3)
P 		2156
avr 7486.8
(3) 		5668.4
(-2.8) 		6849.4
(1) 		5612
(-3) 		1875

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3246
1 2 3 4 5 6 range
A 4138
(-3)
P 		7158.9
(3)
P 		5391.4
(-0.5)
P 		5339.8
(-0.6)
P 		5700.3
(0.1)
P 		4830.8
(-1.6)
P 		3021
B 7260.1
(2.6)
P 		7046.9
(2)
P 		5457.3
(-2.7)
P 		5365.9
(-3)
P 		7383.7
(3)
P 		6131.6
(-0.7)
P 		2018
C 7254
(3)
P 		6752.1
(2)
P 		5532.5
(-0.5)
P 		4279.9
(-3)
P 		6524
(1.5)
P 		6307.1
(1.1)
P 		2974
avr 6217.4
(0.7) 		6986
(3) 		5460.4
(-1.6) 		4995.2
(-3) 		6536
(1.6) 		5756.5
(-0.7) 		1991
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171954_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28068
Sequence Type Exemplar sequence
Representative Public ID AV183189 NCBI
Target Description AV183189_rc /REP_DB=TREMBL Accession /GB=AV183189 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk647f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069785
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000006487 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11602622:11603187:1 None
GENEFINDER00000006489 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11602622:11603187:1 None
F40F11.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:11602604:11603253:1 gene:F40F11.1 A 
F40F11.1.3 ENSEMBL cdna:known chromosome:CEL140:IV:11602610:11603255:1 gene:F40F11.1 None
F40F11.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:11602611:11603255:1 gene:F40F11.1 A 
NM_069785 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-11) (rps-11) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11602848-11603184(+) 73.75 73.75
Public Domain and Genome References
Gene Title ribosomal protein S11
Gene Symbol rps-11
Ensembl F40F11.1
Entrez Gene 178083 Entrez gene
SwissProt Q20206 EMBL-EBI
WormBase CE05860 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17425_AT 40S ribosomal protein S11 (RPS11B) at
ATH1-121501:253598_AT 40S ribosomal protein S11 (RPS11B) at
CANINE:1583112_AT Ribosomal protein S11 cfa
CANINE_2:CFA.1272.1.A1_S_AT Ribosomal protein S11 cfa
CANINE_2:CFA.6195.1.A1_S_AT Ribosomal protein S11 cfa
CANINE_2:CFA.6195.1.A1_X_AT Ribosomal protein S11 cfa
CANINE_2:CFA.1272.2.A1_AT Ribosomal protein S11 cfa
CANINE:1583397_X_AT Ribosomal protein S11 cfa
CANINE:1583396_S_AT Ribosomal protein S11 cfa
CANINE:1589169_X_AT Ribosomal protein S11 cfa
CANINE:1589675_X_AT Ribosomal protein S11 cfa
CANINE:1595954_AT Ribosomal protein S11 cfa
CANINE:1601209_AT Ribosomal protein S11 cfa
CANINE:1603048_AT Ribosomal protein S11 cfa
DROSOPHILA_2:1630252_AT Ribosomal protein S11 dm
DROSOPHILA_2:1639036_AT Ribosomal protein S11 dm
DROSOPHILA_2:1638068_A_AT Ribosomal protein S11 dm
DROSGENOME1:147067_AT Ribosomal protein S11 dm
CHICKEN:GGA.9384.1.S1_AT ribosomal protein S11 gga
PLASMODIUM_ANOPHELES:200031_S_AT ribosomal protein S11 hs
HG-U133_PLUS_2:200031_S_AT ribosomal protein S11 hs
HG-FOCUS:200031_S_AT ribosomal protein S11 hs
HG-U133A:200031_S_AT ribosomal protein S11 hs
HG-U133B:200031_S_AT ribosomal protein S11 hs
HG-U133A_2:200031_S_AT ribosomal protein S11 hs
U133_X3P:200031_S_AT ribosomal protein S11 hs
HG-U95AV2:32330_AT ribosomal protein S11 hs
HUGENEFL:X06617_AT ribosomal protein S11 hs
U133_X3P:G4506680_3P_A_AT ribosomal protein S11 hs
HG-U133A_2:213350_AT Ribosomal protein S11 hs
HG-U133_PLUS_2:213350_AT Ribosomal protein S11 hs
HG-U133A:213350_AT Ribosomal protein S11 hs
HU35KSUBD:RC_AA169182_AT Ribosomal protein S11 hs
U133_X3P:HS.182740.1.A1_3P_AT Ribosomal protein S11 hs
MG-U74AV2:94767_AT ribosomal protein S11 mm
MOE430A:1424000_A_AT ribosomal protein S11 mm
MOUSE430A_2:1424000_A_AT ribosomal protein S11 mm
MOUSE430_2:1424000_A_AT ribosomal protein S11 mm
MU19KSUBB:TC32074_R_AT Ribosomal protein S11 (Rps11), mRNA mm
MU19KSUBB:TC32074_S_AT Ribosomal protein S11 (Rps11), mRNA mm
MU19KSUBB:TC33495_AT Ribosomal protein S11 (Rps11), mRNA mm
RG-U34A:K03250_AT ribosomal protein S11 rn
RAE230A:1367630_AT ribosomal protein S11 rn
RAT230_2:1367630_AT ribosomal protein S11 rn
YEAST_2:1774802_AT Protein component of the small (40S) ribosomal subunit; identical to Rps11Bp and has similarity to E. coli S17 and rat S11 ribosomal proteins Sc
YEAST_2:1779218_S_AT Protein component of the small (40S) ribosomal subunit; identical to Rps11Bp and has similarity to E. coli S17 and rat S11 ribosomal proteins Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97792 Hypothetical protein F40F11.1 [Caenorhabditis elegans] ref|NP_502186.1| Ribosomal Protein, Small subunit family member (rps-11) [Caenorhabditis elegans] 1.0E-79
blast CAE62092 Hypothetical protein CBG06118 [Caenorhabditis briggsae] 3.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR000266 EMBL-EBI Ribosomal protein S17 4.8E-38
Sequence
Target Sequence 
>C. ELEGANS:171954_X_AT
tccgcgggatgatcctcactggagtcgtcctcaagaacaagatgacaaggaccatcgtcg
ttcgtcgtgactaccttcactacatcaagaagtaccgtcgttacgagaagagacannnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacca
tcggagagtgccgaccactttcgaagaccgtcagattcaacgtgttgaaggtcaactagt
ccggtac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCGGGATGATCCTCACTGGAGT 73 597 37 Antisense
CTCACTGGAGTCGTCCTCAAGAACA 543 227 51 Antisense
GGAGTCGTCCTCAAGAACAAGATGA 130 517 57 Antisense
TGACAAGGACCATCGTCGTTCGTCG 11 391 79 Antisense
TTCGTCGTGACTACCTTCACTACAT 265 695 97 Antisense
GTGACTACCTTCACTACATCAAGAA 243 483 103 Antisense
ACATCAAGAAGTACCGTCGTTACGA 191 105 118 Antisense
ACCATCGGAGAGTGCCGACCACTTT 661 37 213 Antisense
CGACCACTTTCGAAGACCGTCAGAT 610 249 228 Antisense
AAGACCGTCAGATTCAACGTGTTGA 689 151 240 Antisense
TGTTGAAGGTCAACTAGTCCGGTAC 709 559 259 Antisense
Sequence Source Affymetrix Proprietary Database