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[171952_s_at] Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)

Description AV198921_rc /REP_DB=TREMBL Accession /GB=AV198921 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk388e5 : 3prime end, single read.
Cluster 6grp_total > 88      4grp_total > 0      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 25.4
(-2.4)
A 		22.7
(-3)
A 		26.5
(-2.2)
A 		50.3
(3)
A 		28
B 5.1
(-3)
A 		28.9
(-0.1)
A 		43.2
(1.6)
P 		54.4
(3)
A 		49
C 39.4
(-0.2)
A 		7.3
(-3)
A 		39.9
(-0.1)
P 		75.5
(3)
P 		68
avr 23.3
(-2.5) 		19.6
(-3) 		36.5
(-0.5) 		60.1
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1083
1 2 3 4 5 6 range
A 17.6
(-2.9)
A 		7.3
(-3)
A 		39.9
(-2.8)
A 		19.5
(-2.9)
A 		636
(1.1)
P 		926.6
(3)
P 		919
B 54.5
(-2.7)
P 		6.2
(-3)
A 		40
(-2.8)
P 		118.3
(-2.4)
P 		531.1
(-0.1)
P 		1089.6
(3)
P 		1083
C 40.1
(-3)
P 		35.4
(-3)
A 		93
(-2.6)
P 		130.4
(-2.4)
P 		506.1
(-0.1)
P 		1015.9
(3)
P 		981
avr 37.4
(-2.9) 		16.3
(-3) 		57.6
(-2.8) 		89.4
(-2.6) 		557.7
(0.3) 		1010.7
(3) 		994
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.3
(3)
A 		4.9
(-3)
A 		6.9
(-0.3)
A 		7.4
(0.4)
A 		4
B 1.6
(-3)
A 		7.1
(0.3)
A 		10
(2)
P 		11.6
(3)
A 		10
C 13
(2.5)
A 		2.1
(-3)
A 		13.9
(3)
P 		12.7
(2.4)
P 		12
avr 8
(0.4) 		4.7
(-3) 		10.3
(2.7) 		10.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 3.2
(-3)
A 		2.6
(-3)
A 		8.7
(-2.8)
A 		5
(-2.9)
A 		191.9
(2.1)
P 		225.6
(3)
P 		223
B 19
(-2.7)
P 		2.1
(-3)
A 		9.7
(-2.9)
P 		31.3
(-2.6)
P 		215.8
(0.2)
P 		406.3
(3)
P 		404
C 14.8
(-2.9)
P 		10.8
(-3)
A 		23.7
(-2.8)
P 		26.2
(-2.7)
P 		163.8
(-0.2)
P 		340.1
(3)
P 		329
avr 12.3
(-2.9) 		5.2
(-3) 		14
(-2.8) 		20.8
(-2.7) 		190.5
(0.5) 		324
(3) 		319
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171952_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27774
Sequence Type Exemplar sequence
Representative Public ID AV198921 NCBI
Target Description AV198921_rc /REP_DB=TREMBL Accession /GB=AV198921 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk388e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064150(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064150 NCBI Caenorhabditis elegans Muscle EXcess family member (mex-1) (mex-1) mRNA, complete cds. 11/11 A 
W03C9.7.1 ENSEMBL cdna:known chromosome:CEL140:II:11968540:11972223:1 gene:W03C9.7 10/11 A 
W03C9.7.2 ENSEMBL cdna:known chromosome:CEL140:II:11968540:11972237:1 gene:W03C9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11971862-11972169(+) 93.79 93.79
Public Domain and Genome References
Gene Title Zinc finger C-x8-C-x5-C-x3-H type (and similar). (2 domains)
Gene Symbol mex-1
Ensembl W03C9.7
Entrez Gene 174836 Entrez gene
SwissProt Q9XTB3 EMBL-EBI
WormBase CE28097 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91362 Hypothetical protein W03C9.7 [Caenorhabditis elegans] emb|CAA19470.2| Hypothetical protein W03C9.7 [Caenorhabditis elegans] ref|NP_496551.1| Muscle EXcess family member (mex-1) [Caenorhabditis elegans] gb|AAC47486.1| MEX-1 [Caenorhabditis elegans] 0.0
blast CAE73409 Hypothetical protein CBG20851 [Caenorhabditis briggsae] 1.0E-143
blast AAU82118 POS-1 [Caenorhabditis briggsae] emb|CAE66049.1| Hypothetical protein CBG11249 [Caenorhabditis briggsae] 4.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.5E-14
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 6.6E-13
Sequence
Target Sequence 
>C. ELEGANS:171952_S_AT
tgccaaattctcacaaattgtcccagtccaaaatttcttacaacangaacnnnnnntccc
ctccaaattttcatgtcatatcataannnnnnnnnnnnnnnnnnnnnnnnnngtccatat
tttgtattttngtgtcccannnnnnggccaatctgagccatatttattttgataat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCAAATTCTCACAAATTGTCCCA 647 585 44 Antisense
AAATTCTCACAAATTGTCCCAGTCC 49 117 48 Antisense
ATTCTCACAAATTGTCCCAGTCCAA 349 11 50 Antisense
TCTCACAAATTGTCCCAGTCCAAAA 250 613 52 Antisense
CTCACAAATTGTCCCAGTCCAAAAT 122 229 53 Antisense
TCCCCTCCAAATTTTCATGTCATAT 348 597 100 Antisense
CCTCCAAATTTTCATGTCATATCAT 708 265 103 Antisense
TCCAAATTTTCATGTCATATCATAA 106 589 105 Antisense
GGCCAATCTGAGCCATATTTATTTT 523 543 189 Antisense
CCAATCTGAGCCATATTTATTTTGA 531 275 191 Antisense
TCTGAGCCATATTTATTTTGATAAT 257 609 195 Antisense
Sequence Source Affymetrix Proprietary Database