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[171950_x_at]

Description AV181787_rc /REP_DB=TREMBL Accession /GB=AV181787 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk624g6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_high_8_8 > 57      6grp_highest_nonorm > 90      6grp_total > 39      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 191.7
(3)
P 		48
(-3)
P 		164.2
(1.9)
P 		80.8
(-1.6)
A 		144
B 102.4
(1.3)
P 		111.2
(3)
P 		87
(-1.6)
P 		79.3
(-3)
P 		32
C 131.4
(-0.7)
P 		159.5
(3)
P 		154.1
(2.3)
P 		113.4
(-3)
P 		46
avr 141.8
(3) 		106.2
(-1.2) 		135.1
(2.2) 		91.2
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 95.4
(-3)
P 		143.7
(0.4)
P 		109.2
(-2)
P 		108.4
(-2.1)
P 		152.5
(1)
P 		181.7
(3)
P 		86
B 193.8
(3)
P 		133.9
(-0.2)
P 		80
(-3)
P 		97
(-2.1)
P 		152.8
(0.8)
P 		153.9
(0.9)
P 		114
C 226.7
(3)
P 		105.9
(-3)
P 		110.6
(-2.8)
P 		106.5
(-3)
P 		221
(2.7)
P 		164
(-0.1)
P 		121
avr 172
(2.7) 		127.8
(-0.8) 		99.9
(-3) 		104
(-2.7) 		175.4
(3) 		166.5
(2.3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 69.8
(3)
P 		10.4
(-3)
P 		42.9
(0.3)
P 		11.8
(-2.9)
A 		59
B 32.7
(3)
P 		27.5
(1)
P 		20.2
(-1.7)
P 		16.9
(-3)
P 		16
C 43.5
(1.2)
P 		45.9
(1.6)
P 		53.7
(3)
P 		19.1
(-3)
P 		35
avr 48.7
(3) 		27.9
(-0.8) 		38.9
(1.2) 		15.9
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 17.6
(-3)
P 		51.1
(3)
P 		23.8
(-1.9)
P 		27.5
(-1.2)
P 		46
(2.1)
P 		44.2
(1.8)
P 		34
B 67.4
(3)
P 		44.6
(0.2)
P 		19.4
(-3)
P 		25.7
(-2.2)
P 		62.1
(2.3)
P 		57.4
(1.8)
P 		48
C 84
(3)
P 		32.3
(-2)
P 		28.1
(-2.4)
P 		21.4
(-3)
P 		71.5
(1.8)
P 		54.9
(0.2)
P 		63
avr 56.3
(2.4) 		42.7
(0.1) 		23.8
(-3) 		24.9
(-2.8) 		59.9
(3) 		52.2
(1.7) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171950_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27990
Sequence Type Exemplar sequence
Representative Public ID AV181787 NCBI
Target Description AV181787_rc /REP_DB=TREMBL Accession /GB=AV181787 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk624g6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T12G3.7 ENSEMBL cdna:known chromosome:CEL140:IV:12026913:12029448:-1 gene:T12G3.7 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12026929-12027074(-) 57.5 57.5
Public Domain and Genome References
Ensembl T12G3.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92986 Hypothetical protein T12G3.7 [Caenorhabditis elegans] emb|CAA19510.1| Hypothetical protein T12G3.7 [Caenorhabditis elegans] ref|NP_502277.1| T12G3.7 [Caenorhabditis elegans] 1.0E-116
blast CAE62163 Hypothetical protein CBG06210 [Caenorhabditis briggsae] 2.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
T12G3.7 1 293-315
Sequence
Target Sequence 
>C. ELEGANS:171950_X_AT
cgtgtgcattttaaacattttcgtcagatatagctttatattttgttccctttcccaaac
accctttgcnttttctccgttcacctttggttggttggttatccctatacg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGTGCATTTTAAACATTTTCGTC 439 245 108 Antisense
GTGTGCATTTTAAACATTTTCGTCA 377 487 109 Antisense
GTGCATTTTAAACATTTTCGTCAGA 582 479 111 Antisense
GCATTTTAAACATTTTCGTCAGATA 28 307 113 Antisense
TAAACATTTTCGTCAGATATAGCTT 500 639 119 Antisense
AACATTTTCGTCAGATATAGCTTTA 556 137 121 Antisense
ACATTTTCGTCAGATATAGCTTTAT 563 105 122 Antisense
CATTTTCGTCAGATATAGCTTTATA 695 213 123 Antisense
TATAGCTTTATATTTTGTTCCCTTT 460 661 136 Antisense
TCTCCGTTCACCTTTGGTTGGTTGG 168 611 181 Antisense
TTGGTTGGTTGGTTATCCCTATACG 138 705 194 Antisense
Sequence Source Affymetrix Proprietary Database