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[171947_x_at] cyclin

Description AV183103_rc /REP_DB=TREMBL Accession /GB=AV183103 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk646f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 99      6grp_total > 78      4grp_total > 41      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 161.9
(-3)
P 		435.3
(3)
P 		329.8
(0.7)
P 		232.7
(-1.4)
P 		273
B 189
(-3)
P 		416.5
(3)
P 		355.4
(1.4)
P 		243
(-1.6)
P 		228
C 187.1
(-3)
P 		391.8
(2.9)
P 		393.6
(3)
P 		276.8
(-0.4)
P 		207
avr 179.3
(-3) 		414.5
(3) 		359.6
(1.6) 		250.8
(-1.2) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2175
1 2 3 4 5 6 range
A 285.1
(-2.7)
P 		252
(-2.8)
P 		195.8
(-3)
P 		356.8
(-2.5)
P 		975.7
(-0.5)
P 		2055.8
(3)
P 		1860
B 313.8
(-2.7)
P 		252
(-2.9)
P 		222.3
(-3)
P 		365
(-2.6)
P 		968.1
(-0.8)
P 		2253.6
(3)
P 		2031
C 292.9
(-2.6)
P 		252.8
(-2.7)
P 		151.4
(-3)
P 		295.4
(-2.6)
P 		1234.9
(-0)
P 		2326.6
(3)
P 		2175
avr 297.3
(-2.7) 		252.3
(-2.8) 		189.8
(-3) 		339.1
(-2.6) 		1059.6
(-0.4) 		2212
(3) 		2022
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 58.9
(-0.5)
P 		94.5
(3)
P 		86.2
(2.2)
P 		34.1
(-3)
P 		60
B 60.3
(-2)
P 		102.9
(3)
P 		82.4
(0.6)
P 		51.8
(-3)
P 		51
C 61.9
(-2)
P 		112.6
(1.4)
P 		137.2
(3)
P 		46.7
(-3)
P 		91
avr 60.4
(-1.4) 		103.3
(3) 		101.9
(2.9) 		44.2
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 802
1 2 3 4 5 6 range
A 52.6
(-2.9)
P 		89.6
(-2.4)
P 		42.6
(-3)
P 		90.5
(-2.4)
P 		294.4
(0.3)
P 		500.5
(3)
P 		458
B 109.2
(-2.6)
P 		83.9
(-2.8)
P 		54
(-3)
P 		96.7
(-2.7)
P 		393.3
(-0.4)
P 		840.4
(3)
P 		786
C 108.6
(-2.4)
P 		77.1
(-2.7)
P 		38.5
(-3)
P 		59.4
(-2.8)
P 		399.6
(-0.1)
P 		778.8
(3)
P 		740
avr 90.1
(-2.6) 		83.5
(-2.7) 		45
(-3) 		82.2
(-2.7) 		362.4
(-0.1) 		706.6
(3) 		662
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171947_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27991
Sequence Type Exemplar sequence
Representative Public ID AV183103 NCBI
Target Description AV183103_rc /REP_DB=TREMBL Accession /GB=AV183103 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk646f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069586(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069586 NCBI Caenorhabditis elegans ZC168.4 (cyclin) mRNA, complete cds. 10/11 A 
ZC168.4.3 ENSEMBL cdna:known chromosome:CEL140:IV:10735314:10737147:1 gene:ZC168.4 10/11 A 
ZC168.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:10735327:10737147:1 gene:ZC168.4 10/11 A 
ZC168.4.4 ENSEMBL cdna:known chromosome:CEL140:IV:10735412:10737147:1 gene:ZC168.4 10/11 A 
ZC168.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:10735414:10737147:1 gene:ZC168.4 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040685 7/11 Cross Hyb Matching Probes None
GENEFINDER00000040690 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10736353-10736870(+) 81.77 81.77
Public Domain and Genome References
Gene Title cyclin
Gene Symbol cyb-1
Ensembl ZC168.4
Entrez Gene 177965 Entrez gene
SwissProt Q10653 EMBL-EBI
WormBase CE06570 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16851_S_AT cyclin 3a (CYC3a) at
ATH1-121501:246938_AT cyclin 3a (CYC3a) at
CANINE_2:CFAAFFX.12419.1.S1_S_AT similar to G2/mitotic-specific cyclin B1 cfa
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94384 Hypothetical protein ZC168.4 [Caenorhabditis elegans] ref|NP_501987.1| ZC168.4 [Caenorhabditis elegans] sp|Q10653|CCNB1_CAEEL G2/mitotic-specific cyclin B1 gb|AAA84394.1| cyclin B 0.0
blast CAE70859 Hypothetical protein CBG17647 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR004367 EMBL-EBI Cyclin, C-terminal 1.8E-21
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 5.2E-57
Sequence
Target Sequence 
>C. ELEGANS:171947_X_AT
gggtgatcattcgttcttggaagttcatcctgtngacggaatcgaggcggagaatgctgt
atcggtcatttgcaaacagctcggagcntctaagaaagtcattgaggatgctgtcgcttt
gctcgccgaagtctcgtataagaacttcaaacaggggaagcttgtcgctattaagaataa
gtatcaatcaagcaagcttgcacaagtttccaacttgatgaccgacgacgtactcgagaa
aatcaatcggatgggccagaatgcaaaagtggacgcatcagaaatggaatgagcacttcg
atccgaaataaacattttgtaccattcagtctttcttgattcttatnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaactcctccagtcgtttccacgtcaatct
ggtcacac

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGATCATTCGTTCTTGGAAGTT 523 497 51 Antisense
GAGGCGGAGAATGCTGTATCGGTCA 626 405 94 Antisense
ATCGGTCATTTGCAAACAGCTCGGA 125 35 111 Antisense
GTCATTGAGGATGCTGTCGCTTTGC 331 467 148 Antisense
CTTTGCTCGCCGAAGTCTCGTATAA 549 223 167 Antisense
GCAAGCTTGCACAAGTTTCCAACTT 153 321 242 Antisense
GTTTCCAACTTGATGACCGACGACG 690 449 256 Antisense
GATGACCGACGACGTACTCGAGAAA 326 409 267 Antisense
TGGAATGAGCACTTCGATCCGAAAT 467 545 335 Antisense
GTACCATTCAGTCTTTCTTGATTCT 144 459 369 Antisense
CGTTTCCACGTCAATCTGGTCACAC 498 247 454 Antisense
Sequence Source Affymetrix Proprietary Database