[Home] | [Total List]

[171946_x_at]

Description AV183395_rc /REP_DB=TREMBL Accession /GB=AV183395 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651a4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 73      6grp_total > 96      4grp_total > 16      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1409
1 2 3 4 range
A 351
(-3)
P 		756.6
(0.8)
P 		624.5
(-0.4)
P 		989.3
(3)
P 		638
B 367.6
(-3)
P 		465.9
(-2.2)
P 		831.2
(0.8)
P 		1097.4
(3)
P 		730
C 370.2
(-3)
P 		689.2
(-1.6)
P 		746.2
(-1.4)
P 		1759.7
(3)
P 		1390
avr 362.9
(-3) 		637.2
(-1.2) 		734
(-0.6) 		1282.1
(3) 		919

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 391
1 2 3 4 5 6 range
A 336.1
(-3)
P 		333.7
(-3)
P 		494.9
(-0.1)
P 		633.3
(2.5)
P 		501.6
(0.1)
P 		661.7
(3)
P 		328
B 535
(-3)
P 		657.6
(2)
P 		541.1
(-2.7)
P 		680.9
(3)
P 		634.8
(1.1)
P 		634.7
(1.1)
P 		146
C 681.2
(2.2)
P 		608.8
(0.8)
P 		522.1
(-0.9)
P 		408.8
(-3)
P 		725
(3)
P 		715.2
(2.8)
P 		316
avr 517.4
(-3) 		533.4
(-2.4) 		519.4
(-2.9) 		574.3
(-0.8) 		620.5
(1) 		670.5
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 127.8
(-3)
P 		164.2
(3)
P 		163.2
(2.8)
P 		144.8
(-0.2)
P 		36
B 117.2
(-2.9)
P 		115.1
(-3)
P 		192.6
(0.9)
P 		233.9
(3)
P 		119
C 122.5
(-3)
P 		198.2
(-0.4)
P 		260.1
(1.7)
P 		296.7
(3)
P 		174
avr 122.5
(-3) 		159.2
(-0.9) 		205.3
(1.8) 		225.1
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 62
(-3)
P 		118.7
(0.4)
P 		107.8
(-0.2)
P 		160.6
(3)
P 		151.4
(2.4)
P 		161.1
(3)
P 		99
B 186.2
(-0.4)
P 		218.9
(1.2)
P 		131.4
(-3)
P 		180.4
(-0.7)
P 		257.9
(3)
P 		236.7
(2)
P 		127
C 252.5
(3)
P 		185.8
(0.7)
P 		132.9
(-1.2)
P 		82.2
(-3)
P 		234.6
(2.4)
P 		239.4
(2.5)
P 		170
avr 166.9
(-0.2) 		174.5
(0.3) 		124
(-3) 		141.1
(-1.9) 		214.6
(3) 		212.4
(2.9) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171946_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27978
Sequence Type Exemplar sequence
Representative Public ID AV183395 NCBI
Target Description AV183395_rc /REP_DB=TREMBL Accession /GB=AV183395 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072598
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T05B11.3.1 ENSEMBL cdna:known chromosome:CEL140:V:7736214:7737613:-1 gene:T05B11.3 A 
T05B11.3.2 ENSEMBL cdna:known chromosome:CEL140:V:7736215:7737505:-1 gene:T05B11.3 A 
NM_072598 NCBI Caenorhabditis elegans Clathrin LIght Chain family member (clic-1) (clic-1) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7736356-7736566(-) 82.33 82.33
Public Domain and Genome References
Gene Title
Gene Symbol clic-1
Ensembl T05B11.3
Entrez Gene 179150 Entrez gene
SwissProt P90961 EMBL-EBI
WormBase CE13219 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504999 Clathrin LIght Chain family member (clic-1) [Caenorhabditis elegans] gb|AAB37069.1| Clathrin light chain protein 1 [Caenorhabditis elegans] 2.0E-71
blast CAE73198 Hypothetical protein CBG20601 [Caenorhabditis briggsae] 6.0E-62
blast EAL40365 ENSANGP00000026839 [Anopheles gambiae str. PEST] ref|XP_558141.1| ENSANGP00000026839 [Anopheles gambiae str. PEST] 4.0E-9
Sequence
Target Sequence 
>C. ELEGANS:171946_X_AT
gggttgttggaaaccttgcttgctggtctggaaacatgctggaaaataaacaagtatctt
gaatatttaacgcaaacacttatannnnnctcgccgttannnnnccttcgcatattcgct
tcaattcttttca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTGTTGGAAACCTTGCTTGCTG 280 497 23 Antisense
TGTTGGAAACCTTGCTTGCTGGTCT 61 565 27 Antisense
GAAACCTTGCTTGCTGGTCTGGAAA 120 359 32 Antisense
AAACCTTGCTTGCTGGTCTGGAAAC 144 125 33 Antisense
ACCTTGCTTGCTGGTCTGGAAACAT 527 87 35 Antisense
GCTTGCTGGTCTGGAAACATGCTGG 55 307 40 Antisense
GCTGGTCTGGAAACATGCTGGAAAA 297 295 44 Antisense
ACAAGTATCTTGAATATTTAACGCA 550 113 72 Antisense
TGAATATTTAACGCAAACACTTATA 113 569 82 Antisense
TTCGCATATTCGCTTCAATTCTTTT 373 697 129 Antisense
CGCATATTCGCTTCAATTCTTTTCA 27 255 131 Antisense
Sequence Source Affymetrix Proprietary Database