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[171945_x_at]

Description AV181819_rc /REP_DB=TREMBL Accession /GB=AV181819 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk625b8 : 3prime end, single read.
Cluster 6grp_total > 10      4grp_total > 57      6grp_cgc > 64      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1092
1 2 3 4 range
A 16.5
(-3)
A 		731.6
(1)
P 		1098.6
(3)
P 		13.8
(-3)
A 		1085
B 20.5
(-3)
A 		883.9
(2.4)
P 		981.5
(3)
P 		31.6
(-2.9)
A 		961
C 67.9
(-2.6)
A 		868.5
(2.2)
P 		1001.3
(3)
P 		6.6
(-3)
A 		995
avr 35
(-2.9) 		828
(1.8) 		1027.1
(3) 		17.3
(-3) 		1010

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 552
1 2 3 4 5 6 range
A 18.5
(-3)
A 		325.8
(3)
P 		323.4
(3)
P 		256.4
(1.6)
A 		222.4
(1)
A 		90.1
(-1.6)
A 		307
B 78.6
(-3)
A 		570.9
(3)
P 		180.1
(-1.8)
P 		309.6
(-0.2)
P 		239.7
(-1)
P 		99.3
(-2.7)
A 		492
C 54.9
(-3)
A 		319.2
(1.8)
P 		322.5
(1.9)
P 		205.6
(-0.2)
A 		382.6
(3)
M 		93.1
(-2.3)
A 		328
avr 50.7
(-3) 		405.3
(3) 		275.3
(0.8) 		257.2
(0.5) 		281.6
(0.9) 		94.2
(-2.3) 		355
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 6
(-2.9)
A 		158.8
(0.3)
P 		287.2
(3)
P 		2
(-3)
A 		285
B 6.5
(-3)
A 		218.3
(2.8)
P 		227.4
(3)
P 		6.7
(-3)
A 		221
C 22.5
(-2.6)
A 		249.7
(1.3)
P 		349
(3)
P 		1.1
(-3)
A 		348
avr 11.7
(-2.8) 		208.9
(1.3) 		287.9
(3) 		3.3
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 3.4
(-3)
A 		115.9
(3)
P 		70.4
(0.6)
P 		65
(0.3)
A 		67.1
(0.4)
A 		21.9
(-2)
A 		113
B 27.3
(-3)
A 		190
(3)
P 		43.7
(-2.4)
P 		82
(-1)
P 		97.4
(-0.4)
P 		37
(-2.6)
A 		163
C 20.4
(-3)
A 		97.4
(1.5)
P 		82.1
(0.6)
P 		41.4
(-1.8)
A 		123.8
(3)
M 		31.2
(-2.4)
A 		103
avr 17
(-3) 		134.4
(3) 		65.4
(-0.5) 		62.8
(-0.7) 		96.1
(1) 		30
(-2.3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171945_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27603
Sequence Type Exemplar sequence
Representative Public ID AV181819 NCBI
Target Description AV181819_rc /REP_DB=TREMBL Accession /GB=AV181819 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk625b8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061354
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C09E8.3 ENSEMBL cdna:known chromosome:CEL140:II:546703:552018:1 gene:C09E8.3 None
NM_061354 NCBI Caenorhabditis elegans C09E8.3 (C09E8.3) mRNA, complete cds. A 
SNAP00000011943 ENSEMBL cdna:SNAP chromosome:CEL140:II:546614:551890:1 None
GENEFINDER00000011946 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:546614:551890:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:551661-551892(+) 73.4 73.4
Public Domain and Genome References
Gene Title
Gene Symbol mlt-10
Ensembl C09E8.3
Entrez Gene 173445 Entrez gene
SwissProt O76555 EMBL-EBI
WormBase CE19349 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26253 Hypothetical protein C09E8.3 [Caenorhabditis elegans] ref|NP_493755.1| C09E8.3 [Caenorhabditis elegans] 0.0
blast CAE56543 Hypothetical protein CBG24274 [Caenorhabditis briggsae] 0.0
blast CAI46577 Hypothetical protein W02B8.6 [Caenorhabditis elegans] ref|NP_001022392.1| W02B8.6 [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Pfam IPR006954 EMBL-EBI Protein of unknown function DUF644 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493755.1 4 542-564,571-593,613-635,642-664
C09E8.3 4 542-564,571-593,613-635,642-664
SNAP00000011943 4 546-568,575-597,617-639,646-668
GENEFINDER00000011946 4 546-568,575-597,617-639,646-668
Sequence
Target Sequence 
>C. ELEGANS:171945_X_AT
cacaggtgttcaccccattgatcttgtaccccgttccgctttgaatcctttgatcttgac
acctatggtcggatccccgcntgatcctgtccccattcgtcttgtacgccaattattgct
gtcgccacaggcgttgttcgcggtcgtgttgtaccccgtaacgccctgtccccactggtt
gagtcaaagctttatttgctcgctgaagttgtgttgtccc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAGGTGTTCACCCCATTGATCTT 527 195 15 Antisense
GTTCCGCTTTGAATCCTTTGATCTT 26 443 47 Antisense
GAATCCTTTGATCTTGACACCTATG 391 327 57 Antisense
ATCTTGACACCTATGGTCGGATCCC 670 17 67 Antisense
TTCGTCTTGTACGCCAATTATTGCT 249 695 110 Antisense
GTACGCCAATTATTGCTGTCGCCAC 319 459 118 Antisense
ATTGCTGTCGCCACAGGCGTTGTTC 164 5 129 Antisense
CCTGTCCCCACTGGTTGAGTCAAAG 496 265 179 Antisense
GAGTCAAAGCTTTATTTGCTCGCTG 686 399 195 Antisense
AGCTTTATTTGCTCGCTGAAGTTGT 37 79 202 Antisense
TTGCTCGCTGAAGTTGTGTTGTCCC 254 703 210 Antisense
Sequence Source Affymetrix Proprietary Database