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[171943_x_at]

Description AV184887_rc /REP_DB=TREMBL Accession /GB=AV184887 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk670g4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 15      4grp_highest_8_8 > 56      4grp_high_8_8 > 43      6grp_highest_nonorm > 70      6grp_total > 26      4grp_total > 44      6grp_highest_sub > 01_02      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 451.8
(3)
P 		444.1
(2.7)
P 		373.2
(0.1)
P 		291.5
(-3)
P 		160
B 428.4
(3)
P 		399.6
(2.1)
P 		278.5
(-1.6)
P 		231.1
(-3)
P 		197
C 364.1
(-1.4)
P 		440.3
(3)
P 		336.1
(-3)
P 		339
(-2.8)
P 		104
avr 414.8
(2.4) 		428
(3) 		329.3
(-1.2) 		287.2
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 408
(3)
P 		354.7
(1.4)
P 		225.5
(-2.4)
P 		204.7
(-3)
P 		386.3
(2.4)
P 		279.4
(-0.8)
P 		203
B 454.9
(3)
P 		339.7
(-0.6)
P 		275.6
(-2.5)
P 		312.4
(-1.4)
P 		260.2
(-3)
P 		268.4
(-2.7)
P 		195
C 407.6
(0.8)
P 		511.6
(3)
P 		250.4
(-2.5)
P 		369.4
(0)
P 		226.6
(-3)
P 		244.1
(-2.6)
P 		285
avr 423.5
(3) 		402
(2.3) 		250.5
(-3) 		295.5
(-1.4) 		291
(-1.6) 		264
(-2.5) 		173
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 164.5
(3)
P 		96.4
(-0.4)
P 		97.6
(-0.3)
P 		42.7
(-3)
P 		122
B 136.6
(3)
P 		98.7
(0.4)
P 		64.5
(-1.9)
P 		49.2
(-3)
P 		87
C 120.5
(2.5)
P 		126.6
(3)
P 		117.1
(2.2)
P 		57.2
(-3)
P 		69
avr 140.5
(3) 		107.2
(0.8) 		93.1
(-0.1) 		49.7
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 75.2
(-1)
P 		126.1
(3)
P 		49.1
(-3)
P 		51.9
(-2.8)
P 		116.6
(2.3)
P 		68
(-1.5)
P 		77
B 158.3
(3)
P 		113.1
(0)
P 		66.9
(-3)
P 		82.7
(-2)
P 		105.7
(-0.5)
P 		100.1
(-0.8)
P 		91
C 151.1
(2.7)
P 		156.1
(3)
P 		63.7
(-3)
P 		74.3
(-2.3)
P 		73.3
(-2.4)
P 		81.7
(-1.8)
P 		92
avr 128.2
(2.7) 		131.8
(3) 		59.9
(-3) 		69.6
(-2.2) 		98.5
(0.2) 		83.3
(-1) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171943_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27653
Sequence Type Exemplar sequence
Representative Public ID AV184887 NCBI
Target Description AV184887_rc /REP_DB=TREMBL Accession /GB=AV184887 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk670g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV184887
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV184887 AV184887_rc /REP_DB=TREMBL Accession /GB=AV184887 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk670g4 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027894 5/11 Cross Hyb Matching Probes None
NM_068457 5/11 Cross Hyb Matching Probes A 
AF273788 5/11 Cross Hyb Matching Probes A 
C45E5.6a.2 5/11 Cross Hyb Matching Probes None
C45E5.6a.1 5/11 Cross Hyb Matching Probes None
C45E5.6b 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171943_X_AT
atccatatactgtgttatttgccgtcctaaaatatctcnnnnnnnatttntctttcatca
agtttctcttctcgnnnnnctngaaatcgtgtgctttgcgggttaaatgttcttttattg
aatgtacacacctcttttcattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntctgtgattctgaatttcatttccag
tccttccttgttttagatgcaaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCATATACTGTGTTATTTGCCGT 20 41 16 Antisense
ACTGTGTTATTTGCCGTCCTAAAAT 397 65 24 Antisense
GTTATTTGCCGTCCTAAAATATCTC 158 447 29 Antisense
GAAATCGTGTGCTTTGCGGGTTAAA 340 361 98 Antisense
GTGCTTTGCGGGTTAAATGTTCTTT 122 479 106 Antisense
TGTTCTTTTATTGAATGTACACACC 639 561 123 Antisense
TTGAATGTACACACCTCTTTTCATT 400 703 133 Antisense
TCTGTGATTCTGAATTTCATTTCCA 202 609 230 Antisense
TCTGAATTTCATTTCCAGTCCTTCC 122 609 238 Antisense
CCAGTCCTTCCTTGTTTTAGATGCA 664 271 252 Antisense
AGTCCTTCCTTGTTTTAGATGCAAA 317 61 254 Antisense
Sequence Source Affymetrix Proprietary Database