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[171941_s_at] Heat shock hsp70 proteins /// Heat shock hsp70 proteins

Description AV184408_rc /REP_DB=TREMBL Accession /GB=AV184408 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk664b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 38      6grp_total > 55      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7508
1 2 3 4 range
A 8126
(3)
P 		3038.9
(-3)
P 		6037.6
(0.5)
P 		5685.7
(0.1)
P 		5087
B 10229.2
(3)
P 		2721.3
(-3)
P 		6429.6
(-0)
P 		7818
(1.1)
P 		7508
C 7788.5
(2.1)
P 		3172.3
(-3)
P 		6131
(0.3)
P 		8617.2
(3)
P 		5445
avr 8714.6
(3) 		2977.5
(-3) 		6199.4
(0.4) 		7373.6
(1.6) 		5737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4057
1 2 3 4 5 6 range
A 4364.8
(-2.7)
P 		5717.8
(-0.7)
P 		8239.3
(3)
P 		5001.3
(-1.8)
P 		4190.6
(-3)
P 		6939.4
(1.1)
P 		4049
B 4786.5
(-3)
P 		5983.2
(-0.9)
P 		8238.9
(3)
P 		4802.6
(-3)
P 		5182.1
(-2.3)
P 		7875.7
(2.4)
P 		3452
C 5640.7
(-2.4)
P 		6212.7
(-1.2)
P 		5787.7
(-2.1)
P 		5412.9
(-2.9)
P 		5352.6
(-3)
P 		8247.3
(3)
P 		2895
avr 4930.7
(-3) 		5971.2
(-0.7) 		7422
(2.4) 		5072.3
(-2.6) 		4908.4
(-3) 		7687.5
(3) 		2779
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2602
1 2 3 4 range
A 2958.7
(3)
P 		659.7
(-3)
P 		1578.4
(-0.6)
P 		832.3
(-2.5)
P 		2299
B 3262
(3)
P 		672.1
(-3)
P 		1489.9
(-1.1)
P 		1666
(-0.7)
P 		2590
C 2578.2
(3)
P 		912.1
(-3)
P 		2136.8
(1.4)
P 		1453
(-1.1)
P 		1666
avr 2933
(3) 		748
(-3) 		1735
(-0.3) 		1317.1
(-1.4) 		2185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2132
1 2 3 4 5 6 range
A 804.6
(-3)
P 		2033.5
(3)
P 		1794.3
(1.8)
P 		1268.4
(-0.7)
P 		1264.5
(-0.8)
P 		1689.5
(1.3)
P 		1229
B 1665.5
(-1.6)
P 		1991.5
(-0.4)
P 		2000.7
(-0.4)
P 		1272.1
(-3)
P 		2105.4
(0)
P 		2936.8
(3)
P 		1665
C 2090.8
(0.6)
P 		1895.7
(-0.1)
P 		1473.1
(-1.6)
P 		1088.5
(-3)
P 		1732
(-0.7)
P 		2760.8
(3)
P 		1672
avr 1520.3
(-1.5) 		1973.6
(0.7) 		1756
(-0.4) 		1209.7
(-3) 		1700.6
(-0.6) 		2462.4
(3) 		1253
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171941_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27940
Sequence Type Exemplar sequence
Representative Public ID AV184408 NCBI
Target Description AV184408_rc /REP_DB=TREMBL Accession /GB=AV184408 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk664b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064108(11), NM_064109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064108 NCBI Caenorhabditis elegans F44E5.4 (F44E5.4) mRNA, complete cds. 11/11 A 
NM_064109 NCBI Caenorhabditis elegans F44E5.5 (F44E5.5) mRNA, complete cds. 11/11 A 
SNAP00000031910 ENSEMBL cdna:SNAP chromosome:CEL140:II:11757117:11759163:-1 11/11 None
SNAP00000031911 ENSEMBL cdna:SNAP chromosome:CEL140:II:11759610:11761656:1 11/11 None
GENEFINDER00000031919 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11757117:11759163:-1 11/11 None
GENEFINDER00000031921 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11759610:11761656:1 11/11 None
F44E5.4.1 ENSEMBL cdna:known chromosome:CEL140:II:11756532:11759163:-1 gene:F44E5.4 11/11 A 
F44E5.4.2 ENSEMBL cdna:known chromosome:CEL140:II:11757011:11759163:-1 gene:F44E5.4 11/11 A 
F44E5.5.1 ENSEMBL cdna:known chromosome:CEL140:II:11759586:11761762:1 gene:F44E5.5 11/11 A 
F44E5.5.2 ENSEMBL cdna:known chromosome:CEL140:II:11759586:11761951:1 gene:F44E5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11761390-11761649(+) 83.17 83.17
Public Domain and Genome References
Gene Title Heat shock hsp70 proteins
Heat shock hsp70 proteins
Ensembl F44E5.4
F44E5.5
Entrez Gene 174805 Entrez gene
174806 Entrez gene
SwissProt Q9XTL8 EMBL-EBI
WormBase CE18679 Wormbase
CE18679 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636055_AT Heat shock protein cognate 2 dm
DROSGENOME1:143192_AT Heat shock protein cognate 2 dm
Protein Similarities
Method ID Description E-Value
blast CAB05508 Hypothetical protein F44E5.5 [Caenorhabditis elegans] emb|CAB05507.1| Hypothetical protein F44E5.4 [Caenorhabditis elegans] ref|NP_496510.1| F44E5.5 [Caenorhabditis elegans] ref|NP_496509.1| F44E5.4 [Caenorhabditis elegans] 0.0
blast CAE67671 Hypothetical protein CBG13234 [Caenorhabditis briggsae] 0.0
blast CAE74314 Hypothetical protein CBG22024 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171941_S_AT
aaaactatcaactgaagatgcatcacgtgcaaaagaagctgttgatgaaacacttcgttg
gttggattccaactcattggctgnnnnngatgaaattgaagcaaaggataaggaattgaa
atcagtttgtcaatcaattctcactaaaatgcaccaatctggacaatncttctgcttctg
ctggatgcgctggaaatcctggaantgntggattcaatcctaacaattatccaca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTATCAACTGAAGATGCATCA 114 129 14 Antisense
GCATCACGTGCAAAAGAAGCTGTTG 427 309 33 Antisense
AAGCTGTTGATGAAACACTTCGTTG 707 149 49 Antisense
GAAACACTTCGTTGGTTGGATTCCA 628 355 60 Antisense
TGGTTGGATTCCAACTCATTGGCTG 399 551 72 Antisense
ATCAGTTTGTCAATCAATTCTCACT 601 29 134 Antisense
ATCAATTCTCACTAAAATGCACCAA 209 27 146 Antisense
CTCACTAAAATGCACCAATCTGGAC 431 225 153 Antisense
CTTCTGCTGGATGCGCTGGAAATCC 245 221 188 Antisense
CTGCTGGATGCGCTGGAAATCCTGG 314 237 191 Antisense
GATTCAATCCTAACAATTATCCACA 107 431 224 Antisense
Sequence Source Affymetrix Proprietary Database