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[171939_x_at] acetylcholine regulator

Description AV182554_rc /REP_DB=TREMBL Accession /GB=AV182554 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639e8 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 64      4grp_high_8_8 > 35      6grp_total > 54      4grp_total > 53      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 330.4
(3)
P 		269.5
(0.4)
A 		307.3
(2)
A 		191.4
(-3)
A 		139
B 327.6
(3)
P 		310
(1.6)
A 		279.4
(-0.8)
M 		250.5
(-3)
P 		77
C 274.6
(-0.8)
M 		354.8
(3)
P 		229.3
(-3)
P 		304.9
(0.6)
A 		126
avr 310.9
(3) 		311.4
(3) 		272
(-0.8) 		248.9
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 340.5
(0.6)
M 		341.8
(0.7)
P 		406.3
(3)
P 		314
(-0.4)
P 		353.2
(1.1)
P 		241.5
(-3)
P 		165
B 321.4
(0.3)
P 		283
(-1.6)
P 		378.1
(3)
P 		306
(-0.5)
P 		253.9
(-3)
P 		370.1
(2.6)
P 		124
C 256.7
(-3)
P 		312
(-0.2)
P 		356.9
(2)
P 		320.6
(0.2)
P 		260.1
(-2.8)
P 		375.9
(3)
P 		119
avr 306.2
(-1.9) 		312.3
(-1.5) 		380.4
(3) 		313.5
(-1.4) 		289.1
(-3) 		329.2
(-0.4) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 120.3
(3)
P 		58.5
(-1)
A 		80.3
(0.4)
A 		28
(-3)
A 		92
B 104.5
(3)
P 		76.6
(-0.3)
A 		64.7
(-1.7)
M 		53.4
(-3)
P 		51
C 90.9
(1.7)
M 		102
(3)
P 		79.9
(0.4)
P 		51.4
(-3)
A 		51
avr 105.2
(3) 		79
(0.4) 		75
(0) 		44.3
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 62.8
(-2.6)
M 		121.6
(3)
P 		88.5
(-0.2)
P 		79.6
(-1)
P 		106.6
(1.6)
P 		58.8
(-3)
P 		63
B 111.8
(0.2)
P 		94.2
(-1.6)
P 		91.8
(-1.9)
P 		81
(-3)
P 		103.1
(-0.7)
P 		138
(3)
P 		57
C 95.2
(0)
P 		95.2
(0)
P 		90.8
(-0.4)
P 		64.5
(-3)
P 		84.2
(-1.1)
P 		125.8
(3)
P 		61
avr 89.9
(-0.2) 		103.7
(2.3) 		90.4
(-0.2) 		75
(-3) 		98
(1.2) 		107.5
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171939_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27750
Sequence Type Exemplar sequence
Representative Public ID AV182554 NCBI
Target Description AV182554_rc /REP_DB=TREMBL Accession /GB=AV182554 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk639e8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067517
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T07A9.10 ENSEMBL cdna:known chromosome:CEL140:IV:390512:393144:1 gene:T07A9.10 A 
SNAP00000017759 ENSEMBL cdna:SNAP chromosome:CEL140:IV:390606:393038:1 None
NM_067517 NCBI Caenorhabditis elegans T07A9.10 (T07A9.10) mRNA, complete cds. A 
GENEFINDER00000017775 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:390606:396248:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:392763-393079(+) 68.32 68.32
Public Domain and Genome References
Gene Title acetylcholine regulator
Ensembl T07A9.10
Entrez Gene 176862 Entrez gene
SwissProt O44412 EMBL-EBI
WormBase CE17219 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9306 protein secretion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39282 Hypothetical protein T07A9.10 [Caenorhabditis elegans] ref|NP_499918.1| T07A9.10 [Caenorhabditis elegans] 0.0
blast CAE67944 Hypothetical protein CBG13544 [Caenorhabditis briggsae] 0.0
blast AAK39281 Hypothetical protein T07A9.9a [Caenorhabditis elegans] ref|NP_741288.1| T07A9.9a [Caenorhabditis elegans] sp|O44411|NOG1_CAEEL Probable nucleolar GTP-binding protein 0.0
blast CAE67897 Hypothetical protein CBG13493 [Caenorhabditis briggsae] 0.0
blast AAM97948 Hypothetical protein T07A9.9b [Caenorhabditis elegans] ref|NP_741289.1| T07A9.9b [Caenorhabditis elegans] 0.0
blast CAE67944 Hypothetical protein CBG13544 [Caenorhabditis briggsae] 1.0E-179
blast CAE70259 Hypothetical protein CBG16760 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 2.70000004768372
Pfam IPR001619 EMBL-EBI Sec1-like protein 2.0E-83
Pfam IPR001619 EMBL-EBI Sec1-like protein 2.7E-31
Pfam IPR001619 EMBL-EBI Sec1-like protein 1.5E-40
Pfam IPR010674 EMBL-EBI Nucleolar GTP-binding 1 6.0E-35
Sequence
Target Sequence 
>C. ELEGANS:171939_X_AT
tccggccggcagcaagtgcgagatatggaagtggattggctnnnnnnnnnnnnnnnnnnn
nnnnnnnnatcannnnngtcgtaggcggaatcacatattctgaaatgagagtcgcctacg
agttgtcgnnnnngccgaccccacccggtatcctgggatccagacgaatttccaaccgcc
gtcgtctttccctggagtcgttacgagatcgaaatactgtaaattgctgaaaatactgta
ttaatgtccccgaatatcgctttgttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGGCCGGCAGCAAGTGCGAGATA 636 593 14 Antisense
GTGCGAGATATGGAAGTGGATTGGC 603 477 29 Antisense
GTCGTAGGCGGAATCACATATTCTG 387 473 91 Antisense
AATGAGAGTCGCCTACGAGTTGTCG 469 163 117 Antisense
ACCCGGTATCCTGGGATCCAGACGA 480 87 156 Antisense
GGATCCAGACGAATTTCCAACCGCC 298 513 169 Antisense
GTCTTTCCCTGGAGTCGTTACGAGA 481 465 197 Antisense
GAGTCGTTACGAGATCGAAATACTG 92 289 208 Antisense
AAATACTGTATTAATGTCCCCGAAT 24 117 244 Antisense
GTATTAATGTCCCCGAATATCGCTT 448 451 251 Antisense
AATGTCCCCGAATATCGCTTTGTTT 626 161 256 Antisense
Sequence Source Affymetrix Proprietary Database