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[171938_x_at]

Description AU115959_rc /REP_DB=TREMBL Accession /GB=AU115959 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 02      6grp_total > 17      4grp_total > 17      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7930
1 2 3 4 range
A 2630.6
(-3)
P 		4522.8
(-1.5)
P 		4811.8
(-1.3)
P 		10278.3
(3)
P 		7648
B 2740.5
(-3)
P 		5054.3
(-1.2)
P 		4368
(-1.8)
P 		10560.8
(3)
P 		7820
C 2957.6
(-3)
P 		5435.3
(-0.8)
P 		5939.6
(-0.4)
P 		9819.6
(3)
P 		6862
avr 2776.2
(-3) 		5004.1
(-1.2) 		5039.8
(-1.2) 		10219.6
(3) 		7443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3979
1 2 3 4 5 6 range
A 2183.3
(3)
P 		2160.7
(2.8)
P 		2081.3
(1.9)
P 		1607.9
(-3)
P 		1697
(-2.1)
P 		1809.2
(-0.9)
P 		575
B 4637.5
(3)
P 		2431.2
(-1.5)
P 		3208.1
(0.1)
P 		2138.8
(-2.1)
P 		1723.8
(-3)
P 		2616.1
(-1.2)
P 		2914
C 5586.6
(3)
P 		2589.5
(-1.6)
P 		1946.6
(-2.6)
P 		1714.4
(-3)
P 		3374.9
(-0.4)
P 		2193.2
(-2.3)
P 		3872
avr 4135.8
(3) 		2393.8
(-1.5) 		2412
(-1.5) 		1820.4
(-3) 		2265.2
(-1.8) 		2206.2
(-2) 		2315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1377
1 2 3 4 range
A 957.8
(-3)
P 		981.8
(-2.7)
P 		1257.9
(0.3)
P 		1504.5
(3)
P 		547
B 873.9
(-3)
P 		1248.3
(-1.4)
P 		1012.2
(-2.4)
P 		2250.5
(3)
P 		1377
C 979
(-3)
P 		1562.7
(0.2)
P 		2070.1
(3)
P 		1655.7
(0.7)
P 		1091
avr 936.9
(-3) 		1264.3
(-0.7) 		1446.7
(0.5) 		1803.6
(3) 		867

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1726
1 2 3 4 5 6 range
A 402.5
(-3)
P 		768.5
(3)
P 		453.3
(-2.2)
P 		407.8
(-2.9)
P 		512.1
(-1.2)
P 		440.5
(-2.4)
P 		366
B 1613.6
(3)
P 		809.2
(-1.6)
P 		779
(-1.8)
P 		566.5
(-3)
P 		700.3
(-2.2)
P 		975.5
(-0.7)
P 		1047
C 2070.7
(3)
P 		790.1
(-1.5)
P 		495.5
(-2.5)
P 		344.8
(-3)
P 		1092.1
(-0.4)
P 		734.2
(-1.6)
P 		1726
avr 1362.3
(3) 		789.3
(-0.7) 		575.9
(-2.1) 		439.7
(-3) 		768.2
(-0.9) 		716.7
(-1.2) 		923
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171938_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27818
Sequence Type Exemplar sequence
Representative Public ID AU115959 NCBI
Target Description AU115959_rc /REP_DB=TREMBL Accession /GB=AU115959 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU115959
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU115959 AU115959_rc /REP_DB=TREMBL Accession /GB=AU115959 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738h4 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072174 3/11 Cross Hyb Matching Probes None
Y38A10A.5.1 3/11 Cross Hyb Matching Probes None
Y38A10A.5.2 3/11 Cross Hyb Matching Probes None
Y38A10A.5.3 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:171938_X_AT
ttaaggaagaaggcctcgtcaaccaaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngagctctaagcaaatcgg
tgcacagcttttcaactcgcttcatacaatcg

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAGGAAGAAGGCCTCGTCAACCA 143 683 85 Antisense
TAAGGAAGAAGGCCTCGTCAACCAA 179 635 86 Antisense
AAGGAAGAAGGCCTCGTCAACCAAG 332 157 87 Antisense
GAGCTCTAAGCAAATCGGTGCACAG 655 387 187 Antisense
AGCTCTAAGCAAATCGGTGCACAGC 709 79 188 Antisense
GCTCTAAGCAAATCGGTGCACAGCT 532 297 189 Antisense
TAAGCAAATCGGTGCACAGCTTTTC 659 637 193 Antisense
AGCAAATCGGTGCACAGCTTTTCAA 155 77 195 Antisense
CAGCTTTTCAACTCGCTTCATACAA 471 201 209 Antisense
AGCTTTTCAACTCGCTTCATACAAT 449 79 210 Antisense
CTTTTCAACTCGCTTCATACAATCG 192 223 212 Antisense
Sequence Source Affymetrix Proprietary Database