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[171937_x_at]

Description AV183431_rc /REP_DB=TREMBL Accession /GB=AV183431 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651f1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 81      6grp_total > 44      4grp_total > 44      6grp_highest_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 362.7
(3)
P 		338.7
(2.1)
P 		363.8
(3)
P 		197.9
(-3)
P 		166
B 311.8
(-0.7)
P 		543.2
(3)
P 		165.6
(-3)
P 		306
(-0.8)
P 		378
C 241.3
(-0.7)
P 		434.6
(3)
P 		121.1
(-3)
P 		260.5
(-0.3)
P 		314
avr 305.3
(-0.6) 		438.8
(3) 		216.8
(-3) 		254.8
(-2) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 373.8
(3)
P 		190.2
(-3)
P 		284.7
(0.1)
P 		203.1
(-2.6)
P 		344.2
(2)
P 		283.5
(0)
P 		184
B 302.9
(1.9)
P 		324.3
(3)
P 		276.3
(0.4)
P 		211.9
(-3)
P 		231.4
(-2)
P 		270.6
(0.1)
P 		112
C 275.5
(-0.9)
P 		203.5
(-2.9)
P 		411.3
(3)
P 		200.3
(-3)
P 		290.4
(-0.4)
P 		326.9
(0.6)
P 		211
avr 317.4
(2.7) 		239.3
(-1.3) 		324.1
(3) 		205.1
(-3) 		288.7
(1.2) 		293.7
(1.5) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 132.1
(3)
P 		73.5
(-0.4)
P 		95.1
(0.8)
P 		29
(-3)
P 		103
B 99.4
(0.8)
P 		134.2
(3)
P 		38.4
(-3)
P 		65.2
(-1.3)
P 		96
C 79.9
(-0.3)
P 		125
(3)
P 		42.2
(-3)
P 		43.9
(-2.9)
P 		83
avr 103.8
(2.3) 		110.9
(3) 		58.6
(-1.8) 		46
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 68.9
(-1)
P 		67.7
(-1.1)
P 		62
(-1.8)
P 		51.5
(-3)
P 		103.9
(3)
P 		69
(-1)
P 		52
B 105.4
(2.7)
P 		108
(3)
P 		67.1
(-1.7)
P 		56.1
(-3)
P 		94
(1.4)
P 		100.9
(2.2)
P 		52
C 102.1
(2.4)
P 		62.1
(-1.1)
P 		104.7
(2.6)
P 		40.3
(-3)
P 		94
(1.7)
P 		109.4
(3)
P 		69
avr 92.1
(2.4) 		79.3
(0.8) 		77.9
(0.6) 		49.3
(-3) 		97.3
(3) 		93.1
(2.5) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171937_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27929
Sequence Type Exemplar sequence
Representative Public ID AV183431 NCBI
Target Description AV183431_rc /REP_DB=TREMBL Accession /GB=AV183431 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV183431
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV183431 AV183431_rc /REP_DB=TREMBL Accession /GB=AV183431 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk651f1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068168 4/11 Cross Hyb Matching Probes A 
SNAP00000031361 3/11 Cross Hyb Matching Probes None
GENEFINDER00000031371 3/11 Cross Hyb Matching Probes None
SNAP00000025313 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025319 1/11 Cross Hyb Matching Probes None
R08C7.3.2 4/11 Cross Hyb Matching Probes A 
R08C7.3.1 4/11 Cross Hyb Matching Probes A 
R08C7.3.3 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4446631-4446827(+) 63.31 63.31
Sequence
Target Sequence 
>C. ELEGANS:171937_X_AT
gaacaagaagggagccccagtcccaggaaagccaggagctccaggacaaggaccacaata
aatgctggacatacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccnnnnn
ttaatctctcatctatcactccccaataggcgacgaattaatttgatctctgcctcatcc
agaagtctccatgtgtcattccctccattcaactacgtgagctgtatggtgtaaaggca

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAAGAAGGGAGCCCCAGTCCCA 307 351 28 Antisense
GTCCCAGGAAAGCCAGGAGCTCCAG 633 475 47 Antisense
GGAGCTCCAGGACAAGGACCACAAT 606 519 62 Antisense
TCACTCCCCAATAGGCGACGAATTA 192 615 163 Antisense
GACGAATTAATTTGATCTCTGCCTC 244 379 179 Antisense
AATTAATTTGATCTCTGCCTCATCC 683 173 183 Antisense
CCTCATCCAGAAGTCTCCATGTGTC 84 267 200 Antisense
TCCAGAAGTCTCCATGTGTCATTCC 143 591 205 Antisense
ATTCCCTCCATTCAACTACGTGAGC 260 9 225 Antisense
CCCTCCATTCAACTACGTGAGCTGT 554 259 228 Antisense
ACGTGAGCTGTATGGTGTAAAGGCA 642 87 242 Antisense
Sequence Source Affymetrix Proprietary Database