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[171936_s_at] mitochondrial precursor receptor

Description AV183545_rc /REP_DB=TREMBL Accession /GB=AV183545 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653a5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 76      6grp_total > 44      4grp_total > 32      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 885
1 2 3 4 range
A 1554.4
(-3)
P 		2364.1
(3)
P 		2150.5
(1.4)
P 		2065.3
(0.8)
P 		810
B 1523.4
(-3)
P 		1681.1
(-1.7)
P 		2279.1
(3)
P 		1925.7
(0.2)
P 		756
C 1479
(-3)
P 		1969
(1.4)
P 		2087.9
(2.5)
P 		2140.2
(3)
P 		661
avr 1518.9
(-3) 		2004.7
(1.5) 		2172.5
(3) 		2043.7
(1.8) 		654

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 750
1 2 3 4 5 6 range
A 1301.9
(1)
P 		1306.5
(1)
P 		1556.8
(3)
P 		1397.6
(1.7)
P 		807.1
(-3)
P 		1060.5
(-1)
P 		750
B 1272
(1.1)
P 		1437.9
(3)
P 		1393.1
(2.5)
P 		903.2
(-3)
P 		1250.2
(0.9)
P 		1109.7
(-0.7)
P 		535
C 1293.4
(0.8)
P 		1317.6
(1.1)
P 		1261.2
(0.5)
P 		941.3
(-3)
P 		1170.1
(-0.5)
P 		1495.7
(3)
P 		554
avr 1289.1
(0.9) 		1354
(2.1) 		1403.7
(3) 		1080.7
(-2.9) 		1075.8
(-3) 		1222
(-0.3) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 425
1 2 3 4 range
A 566
(3)
P 		513.2
(1.8)
P 		562.2
(2.9)
P 		302.3
(-3)
P 		264
B 485.8
(0.8)
P 		415.2
(-2.8)
P 		528.1
(3)
P 		410.4
(-3)
P 		118
C 489.6
(-0.9)
P 		566.1
(0.4)
P 		727.7
(3)
P 		360.9
(-3)
P 		367
avr 513.8
(0.8) 		498.2
(0.4) 		606
(3) 		357.9
(-3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 240
(-3)
P 		464.7
(3)
P 		339
(-0.4)
P 		354.5
(0.1)
P 		243.5
(-2.9)
P 		258.2
(-2.5)
P 		225
B 442.6
(1.5)
P 		478.6
(2.3)
P 		338.3
(-0.8)
P 		239.2
(-3)
P 		508
(3)
P 		413.8
(0.9)
P 		269
C 479.4
(2.6)
P 		402
(1.1)
P 		321
(-0.5)
P 		189.3
(-3)
P 		378.6
(0.6)
P 		500.7
(3)
P 		311
avr 387.3
(1) 		448.4
(3) 		332.8
(-0.7) 		261
(-3) 		376.7
(0.7) 		390.9
(1.2) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171936_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27819
Sequence Type Exemplar sequence
Representative Public ID AV183545 NCBI
Target Description AV183545_rc /REP_DB=TREMBL Accession /GB=AV183545 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk653a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073691 NCBI Caenorhabditis elegans F23H12.2 (F23H12.2) mRNA, complete cds. 11/11 A 
SNAP00000020006 ENSEMBL cdna:SNAP chromosome:CEL140:V:12345069:12346055:-1 11/11 None
GENEFINDER00000020028 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12345069:12346055:-1 11/11 None
F23H12.2 ENSEMBL cdna:known chromosome:CEL140:V:12344914:12346059:-1 gene:F23H12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12344959-12345629(-) 98.73 98.73
Public Domain and Genome References
Gene Title mitochondrial precursor receptor
Ensembl F23H12.2
Entrez Gene 179691 Entrez gene
SwissProt Q19766 EMBL-EBI
WormBase CE05705 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635011_AT Translocase of outer membrane 20 dm
DROSGENOME1:154685_AT Translocase of outer membrane 20 dm
CHICKEN:GGA.987.1.S1_AT translocase of outer mitochondrial membrane 20 homolog (yeast) gga
HG-U95AV2:36198_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HG-U133_PLUS_2:200662_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HG-FOCUS:200662_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HG-U133A:200662_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HG-U133A_2:200662_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HU35KSUBD:RC_AA192957_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HUGENEFL:D13641_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
U133_X3P:G7657256_3P_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
U133_X3P:HS.75187.2.A1_3P_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HG-U133A_2:212773_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HG-U133_PLUS_2:212773_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HG-U133A:212773_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) hs
HG-U95D:83303_R_AT Translocase of outer mitochondrial membrane 20 homolog (yeast) hs
MG-U74AV2:101036_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOE430A:1423079_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430A_2:1423079_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430_2:1423079_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOE430A:1455357_X_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430A_2:1455357_X_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430_2:1455357_X_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOE430A:1423080_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430A_2:1423080_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430_2:1423080_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOE430A:1423081_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430A_2:1423081_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430_2:1423081_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOE430A:1435534_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430A_2:1435534_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOUSE430_2:1435534_A_AT translocase of outer mitochondrial membrane 20 homolog (yeast) mm
MOE430B:1435187_AT Translocase of outer mitochondrial membrane 20 homolog (yeast) (Tomm20), mRNA mm
MOUSE430_2:1435187_AT Translocase of outer mitochondrial membrane 20 homolog (yeast) (Tomm20), mRNA mm
MG-U74BV2:106475_AT Translocase of outer mitochondrial membrane 20 homolog (yeast) (Tomm20), mRNA mm
RG-U34A:U21871_AT translocase of outer mitochondrial membrane 20 homolog (yeast) rn
RG-U34A:D63411_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) rn
RAE230A:1398870_AT translocase of outer mitochondrial membrane 20 homolog (yeast) rn
RAT230_2:1398870_AT translocase of outer mitochondrial membrane 20 homolog (yeast) rn
RAE230A:1370785_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) rn
RAT230_2:1370785_S_AT translocase of outer mitochondrial membrane 20 homolog (yeast) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6605 protein targeting inferred from electronic annotation QuickGO AmiGO
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5742 mitochondrial outer membrane translocase complex inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98945 Hypothetical protein F23H12.2 [Caenorhabditis elegans] ref|NP_506092.1| F23H12.2 [Caenorhabditis elegans] sp|Q19766|TOM20_CAEEL Mitochondrial import receptor subunit TOM20 homolog (Mitochondrial 20 kDa outer membrane protein) (Outer mitochondrial membrane receptor TOM20) 9.0E-86
blast CAE75459 Hypothetical protein CBG23457 [Caenorhabditis briggsae] 1.0E-81
blast AAH76705 MGC79780 protein [Xenopus tropicalis] ref|NP_001005024.1| MGC79780 protein [Xenopus tropicalis] 9.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR002056 EMBL-EBI Protein import receptor MAS20 1.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506092.1 1 13-31
F23H12.2 1 13-31
SNAP00000020006 1 13-31
GENEFINDER00000020028 1 13-31
Sequence
Target Sequence 
>C. ELEGANS:171936_S_AT
tatcttccaacaaacattgtcggaagatcagttccgtgctgttgttcaacaattgccgtc
gactcgcgaacgtcttgcggaaatgttcggagcgaaagcagatgaggcagaaaacgagcc
accaatggttcaatacctcggagacggacctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCTTCCAACAAACATTGTCGGAA 180 659 15 Antisense
ACAAACATTGTCGGAAGATCAGTTC 136 111 24 Antisense
GAAGATCAGTTCCGTGCTGTTGTTC 80 339 37 Antisense
TCAGTTCCGTGCTGTTGTTCAACAA 446 623 42 Antisense
TCCGTGCTGTTGTTCAACAATTGCC 531 593 47 Antisense
CTTGCGGAAATGTTCGGAGCGAAAG 339 215 88 Antisense
GATGAGGCAGAAAACGAGCCACCAA 346 411 115 Antisense
AGAAAACGAGCCACCAATGGTTCAA 658 67 123 Antisense
GCCACCAATGGTTCAATACCTCGGA 637 279 132 Antisense
GGTTCAATACCTCGGAGACGGACCT 442 493 141 Antisense
TCAATACCTCGGAGACGGACCTCCA 172 629 144 Antisense
Sequence Source Affymetrix Proprietary Database