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[171934_x_at]

Description AV175780_rc /REP_DB=TREMBL Accession /GB=AV175780 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk463e9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 85      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 27      6grp_total > 55      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8892
1 2 3 4 range
A 8998.1
(-3)
P 		13175.6
(2)
P 		10947.5
(-0.7)
P 		14020
(3)
P 		5022
B 7257.2
(-3)
P 		11088.7
(0.7)
P 		11992.7
(1.6)
P 		13468.4
(3)
P 		6211
C 5863
(-3)
P 		10882.4
(0.4)
P 		9915.7
(-0.3)
P 		14755.2
(3)
P 		8892
avr 7372.8
(-3) 		11715.6
(0.9) 		10952
(0.2) 		14081.2
(3) 		6708

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7532
1 2 3 4 5 6 range
A 6687.7
(-2.1)
P 		10845.4
(1.2)
P 		13128.4
(3)
P 		6487.1
(-2.3)
P 		5596.4
(-3)
P 		10802.8
(1.1)
P 		7532
B 7158.5
(-2.4)
P 		6793.5
(-3)
P 		9732.1
(1.5)
P 		9110.5
(0.6)
P 		8517.6
(-0.3)
P 		10672.8
(3)
P 		3879
C 9424.9
(-0)
P 		6604.6
(-2.9)
P 		7155.2
(-2.3)
P 		6513.6
(-3)
P 		12339.6
(3)
P 		9032.5
(-0.4)
P 		5826
avr 7757
(-2.2) 		8081.2
(-1.5) 		10005.2
(2.6) 		7370.4
(-3) 		8817.9
(0.1) 		10169.4
(3) 		2799
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1515
1 2 3 4 range
A 3276.2
(3)
P 		2860.1
(1)
P 		2861.9
(1)
P 		2052.3
(-3)
P 		1224
B 2314.3
(-3)
P 		2738.7
(1.6)
P 		2779
(2)
P 		2870.1
(3)
P 		556
C 1940.8
(-3)
P 		3128.7
(1.7)
P 		3455.9
(3)
P 		2488
(-0.8)
P 		1515
avr 2510.4
(-2.6) 		2909.2
(1.7) 		3032.3
(3) 		2470.1
(-3) 		562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2760
1 2 3 4 5 6 range
A 1232.8
(-3)
P 		3857.2
(3)
P 		2859.1
(0.7)
P 		1645.3
(-2.1)
P 		1688.8
(-2)
P 		2630.2
(0.2)
P 		2624
B 2490.8
(-2.2)
P 		2261.3
(-3)
P 		2363.2
(-2.6)
P 		2413.1
(-2.5)
P 		3460.6
(1.2)
P 		3979.8
(3)
P 		1719
C 3493.4
(1.9)
P 		2015.3
(-1.4)
P 		1821.1
(-1.9)
P 		1309.9
(-3)
P 		3992.9
(3)
P 		3023.7
(0.8)
P 		2683
avr 2405.7
(-0.4) 		2711.3
(0.9) 		2347.8
(-0.6) 		1789.4
(-3) 		3047.4
(2.3) 		3211.2
(3) 		1422
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171934_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28019
Sequence Type Exemplar sequence
Representative Public ID AV175780 NCBI
Target Description AV175780_rc /REP_DB=TREMBL Accession /GB=AV175780 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk463e9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV175780
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV175780 AV175780_rc /REP_DB=TREMBL Accession /GB=AV175780 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk463e9 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrM:2263-2568(+) 76.57 83.11
Sequence
Target Sequence 
>C. ELEGANS:171934_X_AT
gagacttttaattatttacatcccannnnnaattatagtaattgctgaacttaaccgggc
gccatttgannnnnctgaaggtgaaagggagttagttagaggatttaatgtggagtttgc
cagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntggnagattaannnnnnnnagggt
nnnnnnnnnnnnnnnnnnnnnnnnnttntcaatntttatagcatntagtnnnnnnnnnnn
nnnnnnnnnnnnnngtagttcataccctcgttatcgttatgatttaa

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTTTTAATTATTTACATCCCA 672 391 36 Antisense
TAGTAATTGCTGAACTTAACCGGGC 37 651 71 Antisense
GTAATTGCTGAACTTAACCGGGCGC 626 461 73 Antisense
GAAGGTGAAAGGGAGTTAGTTAGAG 490 331 112 Antisense
GTGAAAGGGAGTTAGTTAGAGGATT 683 221 116 Antisense
AGAGGATTTAATGTGGAGTTTGCCA 165 21 133 Antisense
AGGATTTAATGTGGAGTTTGCCAGA 614 55 135 Antisense
AGTTCATACCCTCGTTATCGTTATG 697 63 292 Antisense
GTTCATACCCTCGTTATCGTTATGA 165 445 293 Antisense
CATACCCTCGTTATCGTTATGATTT 95 215 296 Antisense
TACCCTCGTTATCGTTATGATTTAA 341 649 298 Antisense
Sequence Source Affymetrix Proprietary Database