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[171933_at]

Description AV184304_rc /REP_DB=TREMBL Accession /GB=AV184304 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 74      6grp_total > 44      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 754
1 2 3 4 range
A 1155.9
(3)
P 		502.6
(-3)
P 		500.3
(-3)
P 		547.6
(-2.6)
P 		656
B 1070.2
(3)
P 		402.4
(-3)
P 		552.7
(-1.6)
P 		521.5
(-1.9)
P 		668
C 1122.7
(3)
P 		486.1
(-3)
P 		637.8
(-1.6)
P 		649.6
(-1.5)
P 		637
avr 1116.3
(3) 		463.7
(-3) 		563.6
(-2.1) 		572.9
(-2) 		653

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 659.9
(-1.9)
P 		818.7
(3)
P 		784.6
(2)
P 		623.8
(-3)
P 		627.8
(-2.9)
P 		657
(-2)
P 		195
B 901.7
(1.5)
P 		797.5
(0.3)
P 		1029.3
(3)
P 		510.3
(-3)
P 		689.2
(-0.9)
P 		775.3
(0.1)
P 		519
C 862
(3)
P 		758.3
(0.4)
P 		767.6
(0.7)
P 		618.4
(-3)
P 		726.5
(-0.3)
P 		824.5
(2.1)
P 		244
avr 807.9
(1.9) 		791.5
(1.5) 		860.5
(3) 		584.2
(-3) 		681.2
(-0.9) 		752.3
(0.7) 		276
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 420.8
(3)
P 		109.1
(-2.5)
P 		130.8
(-2.1)
P 		80.2
(-3)
P 		341
B 341.3
(3)
P 		99.4
(-3)
P 		128.1
(-2.3)
P 		111.1
(-2.7)
P 		242
C 371.6
(3)
P 		139.8
(-2.3)
P 		222.3
(-0.4)
P 		109.5
(-3)
P 		262
avr 377.9
(3) 		116.1
(-2.7) 		160.4
(-1.7) 		100.3
(-3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 121.7
(-3)
P 		291.2
(3)
P 		170.9
(-1.3)
P 		158.2
(-1.7)
P 		189.4
(-0.6)
P 		160
(-1.6)
P 		170
B 313.8
(3)
P 		265.5
(1.4)
P 		250
(0.9)
P 		135.2
(-3)
P 		280
(1.9)
P 		289.1
(2.2)
P 		179
C 319.5
(3)
P 		231.4
(0.3)
P 		195.4
(-0.8)
P 		124.4
(-3)
P 		235.1
(0.4)
P 		276
(1.7)
P 		195
avr 251.7
(2.5) 		262.7
(3) 		205.4
(0.2) 		139.3
(-3) 		234.8
(1.6) 		241.7
(2) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 171933_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27637
Sequence Type Exemplar sequence
Representative Public ID AV184304 NCBI
Target Description AV184304_rc /REP_DB=TREMBL Accession /GB=AV184304 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058530(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058530 NCBI Caenorhabditis elegans Y37E3.11 (Y37E3.11) mRNA, complete cds. 11/11 None
SNAP00000001193 ENSEMBL cdna:SNAP chromosome:CEL140:I:2078970:2085492:1 11/11 None
GENEFINDER00000001214 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2078970:2085492:1 11/11 None
Y37E3.11 ENSEMBL cdna:known chromosome:CEL140:I:2078961:2085614:1 gene:Y37E3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2085295-2085614(+) 99.69 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E3.11
Entrez Gene 171770 Entrez gene
SwissProt Q9BKU2 EMBL-EBI
WormBase CE26830 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20644_AT ethanolamine-phosphate cytidylyltransferase, putative / phosphorylethanolamine transferase, putative / CTP:phosphoethanolamine cytidylyltransferase, putative at
ATH1-121501:266399_AT ethanolamine-phosphate cytidylyltransferase, putative / phosphorylethanolamine transferase, putative / CTP:phosphoethanolamine cytidylyltransferase, putative at
CANINE_2:CFA.17061.1.S1_AT similar to phosphate cytidylyltransferase 2, ethanolamine cfa
CANINE_2:CFAAFFX.9788.1.S1_S_AT similar to phosphate cytidylyltransferase 2, ethanolamine cfa
DROSOPHILA_2:1641183_A_AT Phosphoethanolamine cytidylyltransferase dm
DROSGENOME1:141745_AT Phosphoethanolamine cytidylyltransferase dm
HG-U133_PLUS_2:209577_AT phosphate cytidylyltransferase 2, ethanolamine hs
HG-U133A:209577_AT phosphate cytidylyltransferase 2, ethanolamine hs
HG-FOCUS:209577_AT phosphate cytidylyltransferase 2, ethanolamine hs
HG-U133A_2:209577_AT phosphate cytidylyltransferase 2, ethanolamine hs
HUGENEFL:D84307_AT phosphate cytidylyltransferase 2, ethanolamine hs
U133_X3P:G12653166_3P_X_AT phosphate cytidylyltransferase 2, ethanolamine hs
U133_X3P:G12653166_3P_AT phosphate cytidylyltransferase 2, ethanolamine hs
HG-U95AV2:34261_AT phosphate cytidylyltransferase 2, ethanolamine hs
HG-U95D:75012_AT phosphate cytidylyltransferase 2, ethanolamine hs
HG-U95D:89984_AT phosphate cytidylyltransferase 2, ethanolamine hs
MOUSE430_2:1420493_A_AT phosphate cytidylyltransferase 2, ethanolamine mm
MOE430A:1420493_A_AT phosphate cytidylyltransferase 2, ethanolamine mm
MOUSE430A_2:1420493_A_AT phosphate cytidylyltransferase 2, ethanolamine mm
MG-U74AV2:103914_AT phosphate cytidylyltransferase 2, ethanolamine mm
MG-U74CV2:139034_AT phosphate cytidylyltransferase 2, ethanolamine mm
MG-U74BV2:164604_F_AT phosphate cytidylyltransferase 2, ethanolamine mm
MG-U74CV2:168071_I_AT Phosphate cytidylyltransferase 2, ethanolamine, mRNA (cDNA clone MGC:11578 IMAGE:3707732) mm
MU19KSUBA:TC24737_S_AT Phosphate cytidylyltransferase 2, ethanolamine, mRNA (cDNA clone MGC:11578 IMAGE:3707732) mm
RG-U34A:AF080568_G_AT phosphate cytidylyltransferase 2, ethanolamine rn
RG-U34A:AF080568_AT phosphate cytidylyltransferase 2, ethanolamine rn
RAE230A:1368100_AT phosphate cytidylyltransferase 2, ethanolamine rn
RAT230_2:1368100_AT phosphate cytidylyltransferase 2, ethanolamine rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490931 Y37E3.11 [Caenorhabditis elegans] gb|AAK27869.1| Hypothetical protein Y37E3.11 [Caenorhabditis elegans] 0.0
blast CAE74327 Hypothetical protein CBG22040 [Caenorhabditis briggsae] 0.0
blast CAE74327 Hypothetical protein CBG22040 [Caenorhabditis briggsae] 1.0E-178
blast NP_490931 Y37E3.11 [Caenorhabditis elegans] gb|AAK27869.1| Hypothetical protein Y37E3.11 [Caenorhabditis elegans] 1.0E-164
blast CAE74327 Hypothetical protein CBG22040 [Caenorhabditis briggsae] 1.0E-148
blast XP_624319 PREDICTED: similar to CG5547-PD, isoform D [Apis mellifera] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 9.7E-36
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 6.7E-15
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 2.8E-11
Pfam IPR004820 EMBL-EBI Cytidylyltransferase 6.0E-15
Sequence
Target Sequence 
>C. ELEGANS:171933_AT
gacccgttcgcagaagccaaacgtcgtggaatctaccatgaagtggactcgggaagtgat
atgaccaccgatttgattatcgatcgaatcatccatcaccgtctcgagtatgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCGTTCGCAGAAGCCAAACGTC 103 381 33 Antisense
GTTCGCAGAAGCCAAACGTCGTGGA 111 443 38 Antisense
GAAGCCAAACGTCGTGGAATCTACC 447 345 45 Antisense
AACGTCGTGGAATCTACCATGAAGT 131 141 52 Antisense
GAATCTACCATGAAGTGGACTCGGG 297 327 61 Antisense
ACCATGAAGTGGACTCGGGAAGTGA 439 83 67 Antisense
CGGGAAGTGATATGACCACCGATTT 600 241 82 Antisense
GTGATATGACCACCGATTTGATTAT 327 485 88 Antisense
GACCACCGATTTGATTATCGATCGA 216 381 95 Antisense
GATTATCGATCGAATCATCCATCAC 499 427 107 Antisense
ATCCATCACCGTCTCGAGTATGAGA 205 39 123 Antisense
Sequence Source Affymetrix Proprietary Database