[Home] | [Total List]

[171932_x_at] phospholipase precursor

Description AU116072_rc /REP_DB=TREMBL Accession /GB=AU116072 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk740c6 : 3prime end, single read.
Cluster 6grp_total > 31      4grp_total > 60      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 630.7
(3)
P 		497.5
(1.7)
P 		470.6
(1.4)
P 		13.3
(-3)
A 		617
B 421.4
(1.1)
P 		444.9
(1.4)
P 		608.7
(3)
P 		12
(-3)
A 		597
C 574.7
(3)
P 		472.1
(1.9)
P 		552.7
(2.8)
P 		16.1
(-3)
A 		559
avr 542.3
(3) 		471.5
(2.2) 		544
(3) 		13.8
(-3) 		530

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 961
1 2 3 4 5 6 range
A 514.3
(-0.4)
P 		731.8
(1)
P 		1058.8
(3)
P 		503.4
(-0.5)
P 		359.2
(-1.4)
P 		97.9
(-3)
A 		961
B 571.3
(0)
P 		918
(2.4)
P 		1001.5
(3)
P 		660.9
(0.6)
P 		339.3
(-1.6)
P 		140.9
(-3)
M 		861
C 408.7
(-0.7)
P 		817.2
(2.7)
P 		856.8
(3)
P 		482.9
(-0.1)
P 		303.1
(-1.6)
P 		131.7
(-3)
A 		725
avr 498.1
(-0.4) 		822.3
(1.9) 		972.4
(3) 		549.1
(0) 		333.9
(-1.5) 		123.5
(-3) 		849
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 229.6
(3)
P 		108
(-0.2)
P 		123
(0.2)
P 		1.9
(-3)
A 		228
B 134.4
(2.7)
P 		109.9
(1.6)
P 		141.1
(3)
P 		2.6
(-3)
A 		139
C 190.2
(2.9)
P 		135.7
(1.2)
P 		192.6
(3)
P 		2.7
(-3)
A 		190
avr 184.7
(3) 		117.9
(0.8) 		152.2
(1.9) 		2.4
(-3) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 94.8
(-1.2)
P 		260.3
(3)
P 		230.6
(2.2)
P 		127.7
(-0.4)
P 		108.4
(-0.9)
P 		23.8
(-3)
A 		237
B 198.8
(0.5)
P 		305.5
(3)
P 		243.2
(1.5)
P 		175.1
(-0.1)
P 		137.8
(-1)
P 		52.5
(-3)
M 		253
C 151.5
(0.1)
P 		249.4
(3)
P 		218.1
(2.1)
P 		97.1
(-1.5)
P 		98.1
(-1.4)
P 		44.1
(-3)
A 		205
avr 148.4
(-0.2) 		271.7
(3) 		230.6
(1.9) 		133.3
(-0.6) 		114.8
(-1.1) 		40.1
(-3) 		232
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171932_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27984
Sequence Type Exemplar sequence
Representative Public ID AU116072 NCBI
Target Description AU116072_rc /REP_DB=TREMBL Accession /GB=AU116072 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk740c6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078235
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078235 NCBI Caenorhabditis elegans F09C8.1 (F09C8.1) mRNA, complete cds. A 
F09C8.1 ENSEMBL cdna:known chromosome:CEL140:X:16159563:16163426:-1 gene:F09C8.1 A 
GENEFINDER00000039977 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16159074:16163346:-1 None
SNAP00000039976 ENSEMBL cdna:SNAP chromosome:CEL140:X:16159642:16163412:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16159600-16160416(-) 54.43 54.43
Public Domain and Genome References
Gene Title phospholipase precursor
Ensembl F09C8.1
Entrez Gene 181691 Entrez gene
SwissProt O01300 EMBL-EBI
WormBase CE31470 Wormbase
Functional Annotations
Ortholog
ID Title Organism
MOE430B:1437893_AT cDNA sequence BC033606 mm
MOUSE430_2:1437893_AT cDNA sequence BC033606 mm
MOE430B:1457837_AT cDNA sequence BC033606 mm
MOUSE430_2:1457837_AT cDNA sequence BC033606 mm
MU19KSUBC:TC38683_AT CDNA sequence BC033606, mRNA (cDNA clone MGC:40917 IMAGE:5373588) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92221 Hypothetical protein F09C8.1 [Caenorhabditis elegans] ref|NP_510636.2| F09C8.1 [Caenorhabditis elegans] 0.0
blast CAE69991 Hypothetical protein CBG16394 [Caenorhabditis briggsae] 0.0
blast CAE61529 Hypothetical protein CBG05432 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 1.3E-15
Pfam IPR001087 EMBL-EBI Lipolytic enzyme, G-D-S-L 1.3E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510636.2 1 5-27
F09C8.1 1 5-27
GENEFINDER00000039977 3 354-372,379-396,416-435
SNAP00000039976 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:171932_X_AT
acatggcttcttgtgagggccactttaanttcnnnnnnggggaaaatnaaccaannnnnn
naccaagcccagttgggctcaaaatctacagtttcaaacatgtcagtgccacttcagaca
ttggcctgcccagatgcggcttgccccttcatccgaacacctgagaacagccaggactgt
agtcaatacatgacccctcatgcttaataatttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATGGCTTCTTGTGAGGGCCACTT 349 105 92 Antisense
TGGCTTCTTGTGAGGGCCACTTTAA 191 535 95 Antisense
ACCAAGCCCAGTTGGGCTCAAAATC 473 83 153 Antisense
GGGCTCAAAATCTACAGTTTCAAAC 138 493 166 Antisense
GTTTCAAACATGTCAGTGCCACTTC 620 449 182 Antisense
AGTGCCACTTCAGACATTGGCCTGC 561 53 196 Antisense
TTCAGACATTGGCCTGCCCAGATGC 212 683 204 Antisense
CCTTCATCCGAACACCTGAGAACAG 262 269 237 Antisense
GAGAACAGCCAGGACTGTAGTCAAT 169 393 254 Antisense
GACTGTAGTCAATACATGACCCCTC 620 373 266 Antisense
ATGACCCCTCATGCTTAATAATTTT 127 29 281 Antisense
Sequence Source Affymetrix Proprietary Database