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[171931_s_at] Yeast hypothetical protein YEY6 like

Description AU116135_rc /REP_DB=TREMBL Accession /GB=AU116135 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 92      6grp_total > 76      4grp_total > 24      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 304.4
(-3)
P 		402
(0.3)
P 		453.9
(2)
P 		483
(3)
P 		179
B 338.6
(-3)
P 		385.2
(-1.5)
P 		422.2
(-0.2)
P 		519.1
(3)
P 		181
C 321.7
(-3)
P 		357.9
(-1.2)
P 		442.2
(2.8)
P 		445.8
(3)
P 		124
avr 321.6
(-3) 		381.7
(-0.8) 		439.4
(1.4) 		482.6
(3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 390
1 2 3 4 5 6 range
A 290.6
(-1.3)
P 		218.5
(-3)
P 		361.8
(0.4)
P 		376.8
(0.7)
P 		266.1
(-1.9)
P 		472.6
(3)
P 		254
B 252.6
(-2.9)
P 		247.4
(-3)
P 		351.2
(-0.9)
P 		266.3
(-2.6)
P 		315.4
(-1.6)
P 		539.8
(3)
P 		292
C 290.1
(-2)
P 		227.4
(-3)
P 		276.6
(-2.2)
P 		294.2
(-1.9)
P 		346.1
(-1.1)
P 		608.5
(3)
P 		381
avr 277.8
(-2.1) 		231.1
(-3) 		329.9
(-1.1) 		312.4
(-1.4) 		309.2
(-1.5) 		540.3
(3) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 110.8
(2)
P 		87.3
(-0.9)
P 		118.6
(3)
P 		70.7
(-3)
P 		48
B 108
(2)
P 		95.1
(-3)
P 		97.8
(-2)
P 		110.6
(3)
P 		16
C 106.5
(-0.6)
P 		102.9
(-0.9)
P 		154.1
(3)
P 		75.2
(-3)
P 		79
avr 108.4
(0.6) 		95.1
(-1.5) 		123.5
(3) 		85.5
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 53.6
(-3)
P 		77.7
(-0.6)
P 		78.8
(-0.5)
P 		95.6
(1.1)
P 		80.3
(-0.4)
P 		115.1
(3)
P 		62
B 87.9
(-2.2)
P 		82.3
(-2.5)
P 		85.3
(-2.3)
P 		70.5
(-3)
P 		128.2
(-0.4)
P 		201.3
(3)
P 		131
C 107.5
(-1)
P 		69.4
(-2.6)
P 		70.4
(-2.5)
P 		59.2
(-3)
P 		112
(-0.8)
P 		203.7
(3)
P 		145
avr 83
(-2.5) 		76.5
(-2.9) 		78.2
(-2.8) 		75.1
(-3) 		106.8
(-1.1) 		173.4
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 171931_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27615
Sequence Type Exemplar sequence
Representative Public ID AU116135 NCBI
Target Description AU116135_rc /REP_DB=TREMBL Accession /GB=AU116135 /FEA=Transcript Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Transcript Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171524 NCBI Caenorhabditis elegans C27H6.8 (C27H6.8) mRNA, complete cds. 11/11 A 
C27H6.8.1 ENSEMBL cdna:known chromosome:CEL140:V:9989003:9990370:-1 gene:C27H6.8 11/11 None
C27H6.8.2 ENSEMBL cdna:known chromosome:CEL140:V:9989005:9990372:-1 gene:C27H6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9989116-9989275(-) 52.65 52.65
Public Domain and Genome References
Gene Title Yeast hypothetical protein YEY6 like
Ensembl C27H6.8
Entrez Gene 179392 Entrez gene
SwissProt O17606 EMBL-EBI
WormBase CE18880 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249238_AT expressed protein at
CANINE:1591927_AT similar to MYG1 protein cfa
CANINE:1584014_AT similar to MYG1 protein cfa
CANINE_2:CFA.7402.1.A1_S_AT similar to MYG1 protein cfa
DROSOPHILA_2:1637597_A_AT dm
DROSGENOME1:155085_AT dm
CHICKEN:GGA.9074.2.S1_S_AT similar to MYG1 protein gga
CHICKEN:GGAAFFX.20499.1.S1_AT similar to MYG1 protein gga
CHICKEN:GGAAFFX.20499.1.S1_S_AT similar to MYG1 protein gga
HU35KSUBA:RC_AA401345_S_AT chromosome 12 open reading frame 10 hs
HU35KSUBD:RC_N50809_AT chromosome 12 open reading frame 10 hs
HG-U133A:218220_AT chromosome 12 open reading frame 10 hs
HG-U133_PLUS_2:218220_AT chromosome 12 open reading frame 10 hs
HG-FOCUS:218220_AT chromosome 12 open reading frame 10 hs
HG-U133A_2:218220_AT chromosome 12 open reading frame 10 hs
U133_X3P:G11056017_3P_AT chromosome 12 open reading frame 10 hs
HG-U95B:53911_AT chromosome 12 open reading frame 10 hs
HG-U95D:85648_AT chromosome 12 open reading frame 10 hs
MG-U74AV2:95651_AT melanocyte proliferating gene 1 mm
MOE430A:1424088_AT melanocyte proliferating gene 1 mm
MOUSE430A_2:1424088_AT melanocyte proliferating gene 1 mm
MOUSE430_2:1424088_AT melanocyte proliferating gene 1 mm
MOE430B:1430729_AT melanocyte proliferating gene 1 mm
MOUSE430_2:1430729_AT melanocyte proliferating gene 1 mm
MU19KSUBA:TC19890_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
MU19KSUBA:TC19890_G_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
MU19KSUBA:TC19891_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
MU19KSUBA:TC19891_G_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
MU19KSUBC:TC38329_AT Melanocyte proliferating gene 1, mRNA (cDNA clone MGC:41079 IMAGE:5256915) mm
RG-U34C:RC_AA818018_AT MYG1 protein rn
RAE230A:1388434_AT MYG1 protein rn
RAT230_2:1388434_AT MYG1 protein rn
RAE230B:1391191_AT MYG1 protein rn
RAT230_2:1391191_AT MYG1 protein rn
RG-U34B:RC_AI059659_AT MYG1 protein rn
Protein Similarities
Method ID Description E-Value
blast CAB02797 Hypothetical protein C27H6.8 [Caenorhabditis elegans] emb|CAB05549.1| Hypothetical protein C27H6.8 [Caenorhabditis elegans] ref|NP_741610.1| C27H6.8 [Caenorhabditis elegans] sp|O17606|YK4P_CAEEL Hypothetical UPF0160 protein C27H6.8 in chromosome V 0.0
blast CAE72295 Hypothetical protein CBG19425 [Caenorhabditis briggsae] 0.0
blast CAG07081 unnamed protein product [Tetraodon nigroviridis] 1.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR003226 EMBL-EBI Metal-dependent protein hydrolase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:171931_S_AT
gaaggaaagtggaatcccaggcggagtctttgtccacatttccggattcattggaggaaa
tctgactcgtgaaggagcaattgccatggcacggaaagctctcgaaatagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGAAAGTGGAATCCCAGGCGGA 280 333 111 Antisense
AAGTGGAATCCCAGGCGGAGTCTTT 92 159 117 Antisense
TGGAATCCCAGGCGGAGTCTTTGTC 575 545 120 Antisense
CGGAGTCTTTGTCCACATTTCCGGA 35 243 132 Antisense
CTTTGTCCACATTTCCGGATTCATT 229 223 138 Antisense
GATTCATTGGAGGAAATCTGACTCG 557 429 155 Antisense
GAGGAAATCTGACTCGTGAAGGAGC 227 401 164 Antisense
GTGAAGGAGCAATTGCCATGGCACG 117 481 179 Antisense
ATTGCCATGGCACGGAAAGCTCTCG 694 5 190 Antisense
GCCATGGCACGGAAAGCTCTCGAAA 360 281 193 Antisense
GGCACGGAAAGCTCTCGAAATAGGA 423 535 198 Antisense
Sequence Source Affymetrix Proprietary Database